View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12502_low_3 (Length: 431)

Name: NF12502_low_3
Description: NF12502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12502_low_3
NF12502_low_3
[»] chr3 (11 HSPs)
chr3 (18-431)||(1717438-1717851)
chr3 (202-431)||(1738935-1739164)
chr3 (238-425)||(1754112-1754300)
chr3 (289-425)||(1748796-1748932)
chr3 (41-122)||(46893416-46893497)
chr3 (41-95)||(13639459-13639513)
chr3 (41-122)||(29235677-29235758)
chr3 (41-109)||(48543213-48543281)
chr3 (39-122)||(54186997-54187080)
chr3 (41-110)||(20909363-20909432)
chr3 (41-73)||(54140812-54140844)
[»] chr8 (6 HSPs)
chr8 (40-122)||(30085447-30085529)
chr8 (41-122)||(33440574-33440655)
chr8 (41-122)||(28700583-28700664)
chr8 (41-119)||(6580862-6580939)
chr8 (43-93)||(31703822-31703872)
chr8 (58-122)||(16895271-16895335)
[»] chr4 (5 HSPs)
chr4 (40-125)||(51475233-51475318)
chr4 (41-109)||(31699549-31699617)
chr4 (41-105)||(37306476-37306540)
chr4 (40-117)||(6540258-6540335)
chr4 (41-95)||(43480299-43480353)
[»] scaffold0922 (1 HSPs)
scaffold0922 (41-108)||(709-776)
[»] chr5 (7 HSPs)
chr5 (41-125)||(41020248-41020332)
chr5 (41-103)||(42958487-42958549)
chr5 (41-109)||(5990589-5990657)
chr5 (41-109)||(18237206-18237274)
chr5 (41-109)||(30892150-30892218)
chr5 (41-109)||(32153763-32153831)
chr5 (24-96)||(34320913-34320985)
[»] chr1 (5 HSPs)
chr1 (41-96)||(932035-932090)
chr1 (49-122)||(11709656-11709729)
chr1 (41-122)||(19078941-19079022)
chr1 (41-122)||(19126829-19126910)
chr1 (43-109)||(14562603-14562669)
[»] chr7 (4 HSPs)
chr7 (40-122)||(17878710-17878792)
chr7 (41-109)||(557447-557515)
chr7 (40-96)||(47822035-47822091)
chr7 (41-122)||(43930030-43930110)
[»] chr2 (5 HSPs)
chr2 (43-109)||(5140042-5140108)
chr2 (49-125)||(864178-864254)
chr2 (41-109)||(6951739-6951808)
chr2 (27-120)||(16011989-16012082)
chr2 (41-109)||(37285185-37285253)
[»] chr6 (2 HSPs)
chr6 (41-122)||(7447636-7447716)
chr6 (42-122)||(32439506-32439586)


Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 1717851 - 1717438
Alignment:
Q  18 gtattagatgaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgtta 117  Q
    ||||||||||||||| ||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||    
T  1717851 gtattagatgaaatctatatggatctcaccactttatgtatgatccatttccaatatttgatatccacatgaatttcactaaataagaaagtggacgtta 1717752  T
Q  118 gagagtgtacatggcattcctccttagacagaatgctaggaacactcttactagaactttctctaagattcactctccttatttaaaactttgttaacca 217  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  1717751 gagaatgtacatagcatttctccttagacagaatgctaggaacactcttactggcactttctctaagattcactctccttatttaaaactttgttaacca 1717652  T
Q  218 attgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaata 317  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1717651 aatgaattacctactcgaaactgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaatg 1717552  T
Q  318 agccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtcaaa 417  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717551 agccactaggtgtcaatctagatagcttgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtcaaa 1717452  T
Q  418 tccattggccacag 431  Q
    ||||||||||||||    
T  1717451 tccattggccacag 1717438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 202 - 431
Target Start/End: Complemental strand, 1739164 - 1738935
Alignment:
Q  202 aaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggagga 301  Q
    ||||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  1739164 aaaacttagttcaccaaatgaattacctactcgaaactgatatctttatacatgaattgaacttgtttacagatataataatagaaaaagtttaggagga 1739065  T
Q  302 atagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatactt 401  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  1739064 atagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatactt 1738965  T
Q  402 atgtgatcatgtcaaatccattggccacag 431  Q
    |||||||||||||||| |||||||||||||    
T  1738964 atgtgatcatgtcaaacccattggccacag 1738935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 238 - 425
Target Start/End: Complemental strand, 1754300 - 1754112
Alignment:
Q  238 ctgatttcttt-atacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatct 336  Q
    ||||||||||| |||| ||||||||| ||||  |||| ||  || |||||  ||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  1754300 ctgatttctttgatacttgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatct 1754201  T
Q  337 agatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtcaaatccattgg 425  Q
    ||||||||| ||||| ||||||| ||| ||||||||||  |||||||||||||  |||||| |||||||||| |||||||| |||||||    
T  1754200 agatagcctcaagaaatattacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtcaaacccattgg 1754112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 289 - 425
Target Start/End: Complemental strand, 1748932 - 1748796
Alignment:
Q  289 aagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatac 388  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||| ||||||| || ||||||||||| |||||| ||||||    
T  1748932 aagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagtattacaaggcagcttatgatgctgtgagaaaatac 1748833  T
Q  389 atcccaaatacttatgtgatcatgtcaaatccattgg 425  Q
    | |||| |  |||||||||||||||||||||||||||    
T  1748832 aacccagaggcttatgtgatcatgtcaaatccattgg 1748796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 46893416 - 46893497
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||| | |||||||||||   ||||||||||    
T  46893416 tctcaccactttatgtgggatccatttccaatgtgtgttacccacatgaatttcatttaataagagagtgagtgttagagag 46893497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 13639513 - 13639459
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 95  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||    
T  13639513 tctcaccactttatgtgagatccatttccaatgtgtgatacccacatgaatttca 13639459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 29235758 - 29235677
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    ||||||||||||||||  |||||||||| ||| | || ||||| ||||||||||||  |||||||||||   ||||||||||    
T  29235758 tctcaccactttatgttggatccatttctaatgtgtggtatcctcatgaatttcacccaataagagagtgagtgttagagag 29235677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 48543213 - 48543281
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 109  Q
    |||||||| |||||||| | |||||||||||| | || || |||||||||||||||  |||||||||||    
T  48543213 tctcaccattttatgtggggtccatttccaatgtatgctacccacatgaatttcacccaataagagagt 48543281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 54186997 - 54187080
Alignment:
Q  39 aatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    |||||||||| |||||||| |||||||||| ||| | || || ||||||||| |||||  |||||||||||   ||||||||||    
T  54186997 aatctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcacccaataagagagtgagtgttagagag 54187080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 20909363 - 20909432
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagta 110  Q
    ||||||||||||||||| ||||||||| |||||  || |  |||| ||||||||||  ||||||||||||    
T  20909363 tctcaccactttatgtgggatccattttcaataggtggtgcccacctgaatttcacccaataagagagta 20909432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 54140844 - 54140812
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaata 73  Q
    ||||||||||||||||| |||||||||||||||    
T  54140844 tctcaccactttatgtgggatccatttccaata 54140812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 30085447 - 30085529
Alignment:
Q  40 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    |||||||||||||||||| ||||||||||||| || ||| |  ||||||||||||||| ||||||||||||  ||||||||||    
T  30085447 atctcaccactttatgtgggatccatttccaacatgtgacactcacatgaatttcactcaataagagagtaagtgttagagag 30085529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 33440574 - 33440655
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||| ||||||  |||||||||||  |||||||||||    
T  33440574 tctcaccactttatgtgggatccatttccaatgtgtggtacccacatgactttcacccaataagagagtgaatgttagagag 33440655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 28700664 - 28700583
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    ||||||||||||||||| ||| |||||||||||| || || |||||| ||||| ||  |||||||||||   ||||||||||    
T  28700664 tctcaccactttatgtgggattcatttccaatatgtggtacccacataaatttaacccaataagagagtgagtgttagagag 28700583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 6580939 - 6580862
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttaga 119  Q
    ||||||||||||||||| |||| ||||||||| | || || |||||||||||||||  |||||||| ||  ||||||||    
T  6580939 tctcaccactttatgtgggatc-atttccaatgtgtggtacccacatgaatttcacccaataagagggtgaatgttaga 6580862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 31703822 - 31703872
Alignment:
Q  43 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaattt 93  Q
    ||||||||||||||| |||||||||||||  | |||||||||||| |||||    
T  31703822 tcaccactttatgtgggatccatttccaaagtgtgatatccacattaattt 31703872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 16895335 - 16895271
Alignment:
Q  58 tgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    |||||||||| |||||| || ||||||||||||||| | | |||||||||||   ||||||||||    
T  16895335 tgatccattttcaatatgtggtatccacatgaatttgattcaataagagagtgagtgttagagag 16895271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 51475233 - 51475318
Alignment:
Q  40 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 125  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||  ||||||||||| | |||||||||||||    
T  51475233 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcacccaataagagagtgggtgttagagagtgt 51475318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 31699549 - 31699617
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 109  Q
    |||||||| |||||||| | |||||||||||| | ||||| |||||||||||||||  |||||||||||    
T  31699549 tctcaccattttatgtggggtccatttccaatgtatgatacccacatgaatttcacccaataagagagt 31699617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 37306476 - 37306540
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataaga 105  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||||  |||||||    
T  37306476 tctcaccactttatgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaga 37306540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 6540335 - 6540258
Alignment:
Q  40 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgtta 117  Q
    ||||||||||||| |||  |||||||||||||| | ||||| ||||||  |||||||  ||||||||||| |||||||    
T  6540335 atctcaccactttgtgtaggatccatttccaatgtatgataaccacattgatttcacccaataagagagtggatgtta 6540258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 43480353 - 43480299
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 95  Q
    ||||||||||||||||| ||||||||| |||| | || || ||||||||||||||    
T  43480353 tctcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttca 43480299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 776 - 709
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagag 108  Q
    ||||||||||||||||| ||||||||| |||| | || ||||||||||||||||||| ||||||||||    
T  776 tctcaccactttatgtgggatccattttcaatgtgtggtatccacatgaatttcactcaataagagag 709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 41020248 - 41020332
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 125  Q
    ||||||||||||||||| ||| |||||||||||| || || ||||||  |||||||  ||||||||||| | |||||||||||||    
T  41020248 tctcaccactttatgtgggattcatttccaatatgtggtacccacatatatttcacccaataagagagtgggtgttagagagtgt 41020332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 42958549 - 42958487
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataa 103  Q
    ||||||||||||||||| ||||||||||||||   || || ||||||||||||||| ||||||    
T  42958549 tctcaccactttatgtgggatccatttccaatgcgtggtacccacatgaatttcaccaaataa 42958487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 5990589 - 5990657
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 109  Q
    |||||||| |||||||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  5990589 tctcaccattttatgtgggatccatttccaatgtatggtacccacatgaatttcacccaataaaagagt 5990657  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 18237206 - 18237274
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 109  Q
    ||||||||||||||||| |||| |||| |||| | ||||| |||||||||||||||  ||||| |||||    
T  18237206 tctcaccactttatgtgggatctattttcaatgtgtgatacccacatgaatttcacccaataaaagagt 18237274  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 30892218 - 30892150
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 109  Q
    |||||||| |||||||| |||||||||| ||| | || || ||||||||| |||||  |||||||||||    
T  30892218 tctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcaccgaataagagagt 30892150  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 32153763 - 32153831
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 109  Q
    ||||||||||||||||| |||||||||||||  | ||  |||||||||  ||||||  |||||||||||    
T  32153763 tctcaccactttatgtgggatccatttccaaagtgtgggatccacatgggtttcacccaataagagagt 32153831  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 34320913 - 34320985
Alignment:
Q  24 gatgaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 96  Q
    |||||||||||| | | ||||||||||||||||| |||| |||| |||  | || |||||||||| |||||||    
T  34320913 gatgaaatccatgtgagtctcaccactttatgtgggatctattttcaaagtatggtatccacatggatttcac 34320985  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 932090 - 932035
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 96  Q
    ||||||||||||||||| |||||||||||||| | || ||||||||||||||||||    
T  932090 tctcaccactttatgtgggatccatttccaatgtgtggtatccacatgaatttcac 932035  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 11709656 - 11709729
Alignment:
Q  49 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    ||||||||| |||||||||||||| | || || |||||||||||||||| |||||||||||   ||||||||||    
T  11709656 ctttatgtgggatccatttccaatgtgtggtacccacatgaatttcactcaataagagagtgagtgttagagag 11709729  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 19079022 - 19078941
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19079022 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19078941  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 122
Target Start/End: Complemental strand, 19126910 - 19126829
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19126910 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19126829  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 14562603 - 14562669
Alignment:
Q  43 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 109  Q
    ||||||||||||||| |||||||||||||  | || || | |||| ||||||||| |||||||||||    
T  14562603 tcaccactttatgtgggatccatttccaaagtgtggtacctacataaatttcactcaataagagagt 14562669  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 17878792 - 17878710
Alignment:
Q  40 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    |||||||||||||||||| |||| ||||| ||| | ||||| |||||||| ||||||  |||||||||||| |||||| ||||    
T  17878792 atctcaccactttatgtgggatctatttctaatgtgtgatacccacatgactttcacccaataagagagtaaatgttaaagag 17878710  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 557447 - 557515
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 109  Q
    ||||||||||||||||| |||||||||  ||| | ||||| ||||||||||||||   |||||||||||    
T  557447 tctcaccactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatccaataagagagt 557515  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 47822091 - 47822035
Alignment:
Q  40 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 96  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||    
T  47822091 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcac 47822035  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 43930030 - 43930110
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    |||||||||||||| |||||||||||| |||| | || || |||||||||||||||  ||||| |||||   ||||||||||    
T  43930030 tctcaccactttat-tgtgatccattttcaatgtgtggtacccacatgaatttcacccaataaaagagtgagtgttagagag 43930110  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 5140042 - 5140108
Alignment:
Q  43 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 109  Q
    ||||||||||||||| ||||||||| |||| | || || |||||||||||||||| |||||||||||    
T  5140042 tcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcactcaataagagagt 5140108  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 864178 - 864254
Alignment:
Q  49 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 125  Q
    ||||||||| |||||||||| ||| | || || |||||||||||||||  |||||||||||   |||||||||||||    
T  864178 ctttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagagtgt 864254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 6951808 - 6951739
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaa-tttcactaaataagagagt 109  Q
    ||||||||||||||||| ||||||||| |||| | ||  | ||||||||| ||||||| |||||||||||    
T  6951808 tctcaccactttatgtgggatccattttcaatgtgtggcacccacatgaattttcactcaataagagagt 6951739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 16011989 - 16012082
Alignment:
Q  27 gaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagag 120  Q
    |||||| ||||  ||||||||||||||||| | ||| |||||||| || |  |||||||||| |||| | | ||||||| ||||| ||||||||    
T  16011989 gaaatctatatggatctcaccactttatgtttaatctatttccaaaatgtagtatccacatgtattttattcaataagaaagtaggtgttagag 16012082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 37285185 - 37285253
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 109  Q
    ||||| ||||||| ||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  37285185 tctcatcactttacgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaaagagt 37285253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 7447636 - 7447716
Alignment:
Q  41 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    ||||||||||||||||| |||||||||| ||| | || || |||||||||||||||  || |||||||| ||||||||||||    
T  7447636 tctcaccactttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaacaagagagt-gatgttagagag 7447716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 32439586 - 32439506
Alignment:
Q  42 ctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 122  Q
    |||||| ||||||||| |||||||||||||| | || || |||||||||||||||  |||||||||||   ||||||||||    
T  32439586 ctcaccgctttatgtgggatccatttccaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagag 32439506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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