View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12502_low_4 (Length: 418)
Name: NF12502_low_4
Description: NF12502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12502_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 42097755 - 42097911
Alignment:
| Q |
1 |
cttttttcacactcatcacttcttgcacgctctccataattttctaaacaacctcctttggaccatataattctaacacctttttt-gaattatacaatt |
99 |
Q |
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| T |
42097755 |
cttttttcacactcatcacttctcacacgccctccataatttccaaaacatcctcgtttggactatataatttgaacaccttttttcggattatacaatt |
42097854 |
T |
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| Q |
100 |
caaattttgttaacactcataattcatattataattgatacaaaggcctctactgac |
156 |
Q |
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| T |
42097855 |
caaattttgttaacactcataattcatattataattgatacaaaggcctctactgac |
42097911 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 22928561 - 22928441
Alignment:
| Q |
161 |
atatcatccccacaaaaaatgcacaataattttgtggatggtatgaacagtcagcagtgatcatggtattataactcactcccaaatgaaaatcaagaaa |
260 |
Q |
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| T |
22928561 |
atatcatcaccacaaaaactgcacaacaattttggagatggtagaaatggtcagcagtgatcatgatatcataactcactttcaaaggataagtaaaaaa |
22928462 |
T |
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| Q |
261 |
gcaaagggaataatgaatgaa |
281 |
Q |
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| T |
22928461 |
gaaaagagaagaatgaatgaa |
22928441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 40845532 - 40845462
Alignment:
| Q |
171 |
cacaaaaaatgcacaataattttgtggatggtatgaacagtcagcagtgatcatggtattataactcactc |
241 |
Q |
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| T |
40845532 |
cacaaaaatcgcacaagagttttggggatggtatgaatggctagtagtgatcatggtattataactcactc |
40845462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 261
Target Start/End: Complemental strand, 7901648 - 7901497
Alignment:
| Q |
111 |
aacactcataattcatattataattgatacaaaggcctctactgactaacatatcatccccacaaaaaatgcacaataattttgtggatggtatgaacag |
210 |
Q |
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| T |
7901648 |
aacactcataattcatactataattgatatgaatgtctctacttaccatcttattatccccacataaactacacaacaattttggggatagtatgaatag |
7901549 |
T |
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| Q |
211 |
tcagcagtgatcatggtattataact-cactcccaaatgaaaatcaagaaag |
261 |
Q |
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| T |
7901548 |
ccaacaatgaccattgtatcataaatccactctcaaataaaaattaagaaag |
7901497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 14253083 - 14253016
Alignment:
| Q |
199 |
tggtatgaacagtcagcagtgatcatggtattataactcactcccaaatgaaaatcaagaaagcaaag |
266 |
Q |
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| T |
14253083 |
tggtatgaatggtcagcaatgaccatggcatcataactcactcccatatgaaaattaagaaagaaaag |
14253016 |
T |
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