View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12502_low_5 (Length: 358)
Name: NF12502_low_5
Description: NF12502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12502_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 32762078 - 32762432
Alignment:
| Q |
1 |
aacttccgaaacttatttgaaaatgtatacatataagcacatttgtggatattttaggaaataatcttactatannnnnnnccacaaattattatgannn |
100 |
Q |
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| T |
32762078 |
aacttccgaaacttatttgaaaatgtatacatataagcacatttgtggatattttaggaaataatcttactatattttttttcacaaattattatgattt |
32762177 |
T |
|
| Q |
101 |
nnnnnnggacaaaattatgaaaataaatttggaagggggaaataatcttattataattacacaatggtataataccatagaaatatatacaattaaaatc |
200 |
Q |
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|| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32762178 |
ttttttgggacaaattatgaacataaatttgaaagggggaaataatcttattataattacacaatggtataataccatagaaatatatacaattaaaatc |
32762277 |
T |
|
| Q |
201 |
ttatgtatgaaagtctttcctgcttagttaactgaatttgaaggaacttgaatgcatatcacgacgacgcctctatttcataagagacctggattaaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
32762278 |
ttatgtatgaaagtctttcctgcttagttaactgaatttgaaggaacttgaatgcatatcacgacgacgcctctttttgataagagacctggattaaata |
32762377 |
T |
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| Q |
301 |
ctcatttgttgacctccaagattattttctacttgacataatgatattcattcat |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32762378 |
ctcatttgttgacctccaagattattttctacttgacataatgataatcattcat |
32762432 |
T |
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