View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12502_low_6 (Length: 316)
Name: NF12502_low_6
Description: NF12502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12502_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 75 - 307
Target Start/End: Original strand, 7835207 - 7835440
Alignment:
| Q |
75 |
cattactcaaataatttttaaatctatgagnnnnnnncaatttctaaatgtccttttcgtaagaaaa-aagtctgatctaggacaaacattcaatcaagg |
173 |
Q |
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| T |
7835207 |
cattactcaaataatttttaaatctacgagaaaaaaacaatttctaaatgtccatttcgtaagaaaaaaagtctgatctaggacaaacattcaatcaagg |
7835306 |
T |
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| Q |
174 |
gtaatatttgagtagagttgaattatcgctatttgagt-ggggttgagttattgcaatttggcaccacggtgaattcgatataattaaagattattcatt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |
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| T |
7835307 |
gtaatatttgagtagagttgaattatcgctatttgagtgggggttgagttattgcaatttggcaccacggtgaattcgacataatt-aagatcattcatt |
7835405 |
T |
|
| Q |
273 |
ctaatttttcaaaagctatattttttaacctttgc |
307 |
Q |
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| T |
7835406 |
ctaatttttcaaaagctatattttttaacctttgc |
7835440 |
T |
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