View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12502_low_7 (Length: 299)
Name: NF12502_low_7
Description: NF12502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12502_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 59 - 283
Target Start/End: Complemental strand, 2152109 - 2151876
Alignment:
| Q |
59 |
aatccaaattaacacattagggacgagtaacactatgattagagtaggcattgctttacacaaagattttgttttatctcacatagttgacaatcaatat |
158 |
Q |
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| T |
2152109 |
aatccaaattaacacattagggacgagtaacactatgattagagtaggcattgctttacacaaagattttgttttatctcacatagttgacaatcaatat |
2152010 |
T |
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| Q |
159 |
ttcaatttagtgattca---------caccactctcatatctaatggctaccttgaaaatttatttctcatttcccatattgatcttgctttttcactca |
249 |
Q |
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| T |
2152009 |
ttcaatttagtgattcacacctcaagcaccactctcatatctaatggctaccttgaaaatttatttctcatttcccatattgatcttgctttttcactca |
2151910 |
T |
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| Q |
250 |
acaaaaagcacagctccaatttgtgacaagagac |
283 |
Q |
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| T |
2151909 |
acaaaaagcacagctccaatgtgtgacaagagac |
2151876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 273
Target Start/End: Complemental strand, 2142429 - 2142340
Alignment:
| Q |
184 |
tcatatctaatggctaccttgaaaatttatttctcatttcccatattgatcttgctttttcactcaacaaaaagcacagctccaatttgt |
273 |
Q |
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| T |
2142429 |
tcatatctaatggctaccatgaaaatttctttcatattttccatagtcctcttgctttttcactcaacaagaagcagagctccaatttgt |
2142340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 2146599 - 2146513
Alignment:
| Q |
180 |
actctcatatctaatggctaccttgaaaatttatttctcatttcccatattgatcttgctttttcactcaacaaaaagcacagctcc |
266 |
Q |
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| T |
2146599 |
actctcattactaatggctaccttgagaatttcattcatattttccatagttctcttgctttttcactcaacaaaaagcacaactcc |
2146513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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