View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12502_low_9 (Length: 268)
Name: NF12502_low_9
Description: NF12502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12502_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 18662101 - 18661851
Alignment:
| Q |
10 |
atggacctcaccttcaacaaataaagcatacactcatacacactatatatacttatacagttacattgcaattgcaacaacaaaaattaactaataaaat |
109 |
Q |
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| T |
18662101 |
atggacatcaccttcaacaaataaagcatacactcatacacactatatatacttacatagttacattgcaattgcaacaacaataattaactaataaaat |
18662002 |
T |
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| Q |
110 |
ggtttacacaatttcacatattttggcagtcatgttgctatttcccttccaatgttcctcctctgcatcatctttgataaaaggatcctctctctcagta |
209 |
Q |
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| T |
18662001 |
ggcttacacaatttcacatattttggtagtcatgttgctatttcccttccaatgttcctcctctgtatcatctttgataaaaggatcctctctctcagta |
18661902 |
T |
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| Q |
210 |
gagaaacatacagaagatgtaattgtctcttcaaagggtacgttctctgct |
260 |
Q |
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| T |
18661901 |
gagaaacatacagaagatgtaattgtctcttcaaagggtacattctctgct |
18661851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 21132930 - 21132742
Alignment:
| Q |
72 |
acattgcaattgcaacaacaaaaattaactaataaaatggtttacacaatttcacatattttggcagtcatgttgctatttcccttccaatgttcctcct |
171 |
Q |
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| T |
21132930 |
acattgcaattgcaagaacaataattaactaataacatggttttcaaaatttcacatattttcctaatcttctttctatttcccttccaatgttcatctc |
21132831 |
T |
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| Q |
172 |
ctgcatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaagggtacgttctctgct |
260 |
Q |
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| T |
21132830 |
atttatcatctttgaaaaaaggctcttctctctcagtagagaaacatgcagaagatgtaattgtttcttcaaagggaactttctctgct |
21132742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 21127658 - 21127417
Alignment:
| Q |
17 |
tcaccttcaacaaataaagcataca-ctcatacacactatatatacttatacag-ttacattgcaattgcaacaacaaaaattaactaataaaatggttt |
114 |
Q |
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||||||||||||| ||||||||||| |||| |||||| | |||| ||||| ||||||||||||||||| ||||| ||||||||||||| ||||||| |
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| T |
21127658 |
tcaccttcaacaactaaagcatacaactcacacacacactgtata----tacagcttacattgcaattgcaagaacaataattaactaataacatggttt |
21127563 |
T |
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| Q |
115 |
acacaatttcacatattttggcagtcatgttgctatttcccttccaatgttcctcctctgcatcatctttgataaaaggatcctctctctcagtagagaa |
214 |
Q |
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| T |
21127562 |
tcaaaatttcacatattttcctaatcttctttctatttccctttcaatgttcatctcatttatcatctttgaaaaagggctcttctctctcagtagagaa |
21127463 |
T |
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| Q |
215 |
acatacagaagatgtaattgtctcttcaaagggtacgttctctgct |
260 |
Q |
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| T |
21127462 |
acatgcagaagatgtaactgtttcttcaaagggaactttctctgct |
21127417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 260
Target Start/End: Complemental strand, 21120180 - 21120033
Alignment:
| Q |
116 |
cacaatttcacatattttggcagtcatgttgctatttcccttccaat---gttcctcctctgcatcatctttgataaaaggatcctctctctcagtagag |
212 |
Q |
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| T |
21120180 |
cacaatatcatatatttttttagtcttgttgctatttcccttccaatattgttcatcttctgtatcatctttgaacaagggatcttctctctctgtagag |
21120081 |
T |
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| Q |
213 |
aaacatacagaagatgtaattgtctcttcaaagggtacgttctctgct |
260 |
Q |
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| T |
21120080 |
aaacatacagaagatgtaattgtctcttcaaatggcactttctctgct |
21120033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 244
Target Start/End: Original strand, 39120049 - 39120221
Alignment:
| Q |
70 |
ttacattgcaattgcaacaacaaa-aattaactaataaaatggtttacacaatttcacatattttggcagtcatgttgctatttcccttccaatgttcct |
168 |
Q |
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|||||||||||||||||||||||| |||||||||| | ||| || |||||||||| || |||| || | ||| ||||||||||||||||||| | |
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| T |
39120049 |
ttacattgcaattgcaacaacaaacaattaactaaca---tggctttcacaatttcatattttttcctagcctacttgttatttcccttccaatgttcat |
39120145 |
T |
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| Q |
169 |
cctctgcatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaa |
244 |
Q |
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| T |
39120146 |
cttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaa |
39120221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 244
Target Start/End: Original strand, 39129782 - 39129954
Alignment:
| Q |
70 |
ttacattgcaattgcaacaacaaa-aattaactaataaaatggtttacacaatttcacatattttggcagtcatgttgctatttcccttccaatgttcct |
168 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| | ||| || |||||||||| || |||| || | ||| ||||||||||||||||||| | |
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| T |
39129782 |
ttacattgcaattgcaacaacaaacaattaactaaca---tggctttcacaatttcatattttttcctagcctacttgttatttcccttccaatgttcat |
39129878 |
T |
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| Q |
169 |
cctctgcatcatctttgataaaaggatcctctctctcagtagagaaacatacagaagatgtaattgtctcttcaaa |
244 |
Q |
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| T |
39129879 |
cttcattatcatcattgaacaaagggtcctctctttcagtagagaagtatgctgaagatgtaattgtttcttcaaa |
39129954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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