View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12503_high_1 (Length: 427)
Name: NF12503_high_1
Description: NF12503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12503_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 27 - 409
Target Start/End: Complemental strand, 10772385 - 10772001
Alignment:
| Q |
27 |
gaaaacaaagtttattttataagcaataacactctaaccaaacacacttcatcttcttctttgttcatcttgaaaattgttattccttgataagatgagc |
126 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
10772385 |
gaaagcaaagtttgttttataagcaataacactctaaccaaacacacttcatcttcatctttgttcatcttgtaa-ttgttattccttgataagatgagc |
10772287 |
T |
|
| Q |
127 |
atcaatatcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaaagtccatttc |
226 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10772286 |
atcaatatcttttgtgacctttgcagcaaattccaaaaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaatgtccatttc |
10772187 |
T |
|
| Q |
227 |
acaaacccacca---tgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccatcaaagacgctatatgtaatta |
323 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10772186 |
acaatcccaccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccatcaaagaagctatatgtaatta |
10772087 |
T |
|
| Q |
324 |
ccttattatcatcatctatagtctcaactttttctttagcactttgnnnnnnnccttctgcatggattctcacatatttaaaatca |
409 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| |
|
|
| T |
10772086 |
ccttattgtcatcatctatagtctcaactttttctttagcactttgtttttttccttctgcatggattcgcacgtatttaaaatca |
10772001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 33 - 369
Target Start/End: Complemental strand, 10777658 - 10777328
Alignment:
| Q |
33 |
aaagtttattttataagcaataacactctaaccaaacacacttcatcttcttctttgttcatcttgaaaattgttattccttgataagatgagcatcaat |
132 |
Q |
| |
|
||||||||||| ||| |||||||||||| | |||||||||||||||| | |||||||||| ||| |||||||||| |||||||| |||||| |
|
|
| T |
10777658 |
aaagtttatttaatatgcaataacactcaagccaaacacacttcatcct------tgttcatctttg---ttgctattccttgacaagatgagaatcaat |
10777568 |
T |
|
| Q |
133 |
atcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaaagtccatttcacaa-- |
230 |
Q |
| |
|
||| ||| ||| |||| ||||||| |||||| ||||||||||||||| ||||| ||| ||||||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
10777567 |
atcttttatgagctttacagcaaagtccaagtatgaatcaggagatgaacctgcaatttcctcctttagcttctcatattcataagtccatttcacaatt |
10777468 |
T |
|
| Q |
231 |
-acccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccatcaaagacgctatatgtaattaccttat |
329 |
Q |
| |
|
||||||||||| |||| ||||||||||||| || ||||||||||||||||| |||||| ||| ||||||||||||| ||||||| | |||| ||||| |
|
|
| T |
10777467 |
ccaccaccatgttctttatgaatcacttgtaatattgcctttaaactcttgtaattctcactcacgtccccatcaaagaagctatatatgattatcttat |
10777368 |
T |
|
| Q |
330 |
tatcatcatctatagtctcaactttttctttagcactttg |
369 |
Q |
| |
|
| |||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
10777367 |
tgtcatcatctatattctcaattttcgctttagcactttg |
10777328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 107 - 369
Target Start/End: Complemental strand, 10784376 - 10784111
Alignment:
| Q |
107 |
tattccttgataagatgagcatcaatatcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttct |
206 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||||||||||| |||||| |||||| |||||||||||||| ||||||||| ||||| ||||| |||| |
|
|
| T |
10784376 |
tattccttggcaagatgagaatcaatatcttttgtgacctttacagcaaggtccaagtatgaatcaggagatccacctgtaatttcctcttttagcttct |
10784277 |
T |
|
| Q |
207 |
catactcaaaagtccatttcacaaac---ccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccatc |
303 |
Q |
| |
|
|||| || | | |||||| |||| | ||||||||||| |||| |||||||||||| || ||||||||||||||||| | |||| |||||| ||||| |
|
|
| T |
10784276 |
catattcgtatgcccatttaacaatcccaccaccatgttctttatggatcacttgtaatattgcctttaaactcttgtaattttcactcacttctccatc |
10784177 |
T |
|
| Q |
304 |
aaagacgctatatgtaattaccttattatcatcatctatagtctcaactttttctttagcactttg |
369 |
Q |
| |
|
||| | ||||||| | |||| |||||| ||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
10784176 |
aaaaatgctatatatgattatcttattgtcatcatctatagtctcaatttttgctttagcactttg |
10784111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 118 - 368
Target Start/End: Complemental strand, 10791061 - 10790796
Alignment:
| Q |
118 |
aagatgagcatcaatatcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaaa |
217 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||| ||| |||||| || |||||||| ||| |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
10791061 |
aagatgataatcaatatcttttgtgacctctgcaacaaggtccaagtataaatcaggacatgcacctataatatcctcctttactttctcatactcaaaa |
10790962 |
T |
|
| Q |
218 |
gtccatttcacaaacccaccatgttcctta---------------tcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccat |
302 |
Q |
| |
|
|||||| | |||| ||||| ||| ||| |||| |||||| |||||| |||| ||||||||||||||||||| ||| | |||| |
|
|
| T |
10790961 |
gtccatctaacaagtgaaccatattcgttaatatctaattcgcaatcaaacacttgcaatgttcccttgaaactcttgtaactctcactcacatttccat |
10790862 |
T |
|
| Q |
303 |
caaagacgctatatgtaattaccttattatcatcatctatagtctcaactttttctttagcacttt |
368 |
Q |
| |
|
|||||| |||| |||| ||||||||||| ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
10790861 |
caaagaggctaaatgtgattaccttattctcatcatctatagtctcaattttaactttagcacttt |
10790796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University