View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12503_low_1 (Length: 427)
Name: NF12503_low_1
Description: NF12503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12503_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 27 - 409
Target Start/End: Complemental strand, 10772385 - 10772001
Alignment:
| Q |
27 |
gaaaacaaagtttattttataagcaataacactctaaccaaacacacttcatcttcttctttgttcatcttgaaaattgttattccttgataagatgagc |
126 |
Q |
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| T |
10772385 |
gaaagcaaagtttgttttataagcaataacactctaaccaaacacacttcatcttcatctttgttcatcttgtaa-ttgttattccttgataagatgagc |
10772287 |
T |
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| Q |
127 |
atcaatatcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaaagtccatttc |
226 |
Q |
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| T |
10772286 |
atcaatatcttttgtgacctttgcagcaaattccaaaaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaatgtccatttc |
10772187 |
T |
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| Q |
227 |
acaaacccacca---tgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccatcaaagacgctatatgtaatta |
323 |
Q |
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| T |
10772186 |
acaatcccaccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccatcaaagaagctatatgtaatta |
10772087 |
T |
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| Q |
324 |
ccttattatcatcatctatagtctcaactttttctttagcactttgnnnnnnnccttctgcatggattctcacatatttaaaatca |
409 |
Q |
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| T |
10772086 |
ccttattgtcatcatctatagtctcaactttttctttagcactttgtttttttccttctgcatggattcgcacgtatttaaaatca |
10772001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 33 - 369
Target Start/End: Complemental strand, 10777658 - 10777328
Alignment:
| Q |
33 |
aaagtttattttataagcaataacactctaaccaaacacacttcatcttcttctttgttcatcttgaaaattgttattccttgataagatgagcatcaat |
132 |
Q |
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| T |
10777658 |
aaagtttatttaatatgcaataacactcaagccaaacacacttcatcct------tgttcatctttg---ttgctattccttgacaagatgagaatcaat |
10777568 |
T |
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| Q |
133 |
atcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaaagtccatttcacaa-- |
230 |
Q |
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| T |
10777567 |
atcttttatgagctttacagcaaagtccaagtatgaatcaggagatgaacctgcaatttcctcctttagcttctcatattcataagtccatttcacaatt |
10777468 |
T |
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| Q |
231 |
-acccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccatcaaagacgctatatgtaattaccttat |
329 |
Q |
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| T |
10777467 |
ccaccaccatgttctttatgaatcacttgtaatattgcctttaaactcttgtaattctcactcacgtccccatcaaagaagctatatatgattatcttat |
10777368 |
T |
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| Q |
330 |
tatcatcatctatagtctcaactttttctttagcactttg |
369 |
Q |
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| T |
10777367 |
tgtcatcatctatattctcaattttcgctttagcactttg |
10777328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 107 - 369
Target Start/End: Complemental strand, 10784376 - 10784111
Alignment:
| Q |
107 |
tattccttgataagatgagcatcaatatcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttct |
206 |
Q |
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||||||||| |||||||| ||||||||| |||||||||||| |||||| |||||| |||||||||||||| ||||||||| ||||| ||||| |||| |
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| T |
10784376 |
tattccttggcaagatgagaatcaatatcttttgtgacctttacagcaaggtccaagtatgaatcaggagatccacctgtaatttcctcttttagcttct |
10784277 |
T |
|
| Q |
207 |
catactcaaaagtccatttcacaaac---ccaccatgttccttatcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccatc |
303 |
Q |
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| T |
10784276 |
catattcgtatgcccatttaacaatcccaccaccatgttctttatggatcacttgtaatattgcctttaaactcttgtaattttcactcacttctccatc |
10784177 |
T |
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| Q |
304 |
aaagacgctatatgtaattaccttattatcatcatctatagtctcaactttttctttagcactttg |
369 |
Q |
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| T |
10784176 |
aaaaatgctatatatgattatcttattgtcatcatctatagtctcaatttttgctttagcactttg |
10784111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 118 - 368
Target Start/End: Complemental strand, 10791061 - 10790796
Alignment:
| Q |
118 |
aagatgagcatcaatatcgtttgtgacctttgcagcaaattccaagaatgaatcaggagatggacctgtaatatcctcctttagtttctcatactcaaaa |
217 |
Q |
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| T |
10791061 |
aagatgataatcaatatcttttgtgacctctgcaacaaggtccaagtataaatcaggacatgcacctataatatcctcctttactttctcatactcaaaa |
10790962 |
T |
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| Q |
218 |
gtccatttcacaaacccaccatgttcctta---------------tcaatcacttgtaatgttacctttaaactcttgtaactctcacccacttccccat |
302 |
Q |
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|||||| | |||| ||||| ||| ||| |||| |||||| |||||| |||| ||||||||||||||||||| ||| | |||| |
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| T |
10790961 |
gtccatctaacaagtgaaccatattcgttaatatctaattcgcaatcaaacacttgcaatgttcccttgaaactcttgtaactctcactcacatttccat |
10790862 |
T |
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| Q |
303 |
caaagacgctatatgtaattaccttattatcatcatctatagtctcaactttttctttagcacttt |
368 |
Q |
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|||||| |||| |||| ||||||||||| ||||||||||||||||||| ||| |||||||||||| |
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| T |
10790861 |
caaagaggctaaatgtgattaccttattctcatcatctatagtctcaattttaactttagcacttt |
10790796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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