View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12503_low_11 (Length: 207)
Name: NF12503_low_11
Description: NF12503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12503_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 46343935 - 46344101
Alignment:
| Q |
23 |
aagtcgattgatatagttgacagcaataagtttatgttaggactctatttgacaaaatcactaattaccagagattttacaaaaattacactttgaagct |
122 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46343935 |
aagtcgattgatatagttgacaacaataagtttatgttaggactctatttgacaaaatcactaattaccagagattttacaaaaattacactttgaagct |
46344034 |
T |
|
| Q |
123 |
ttaacaaaatagtctaccacaattcaaaacatgcatttagaatatgtagggttagaacttagaacct |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46344035 |
ttaacaaaatagtctaccacaattcaaaacatgcatttagaatatgtagggttagaacttagaacct |
46344101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University