View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12503_low_4 (Length: 323)
Name: NF12503_low_4
Description: NF12503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12503_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 42313556 - 42313855
Alignment:
| Q |
11 |
cagagacaaggagagtctcatacttaatagagagatgtgcggagtattctccataccaataaaatccgggctatatttcacatccaaccataattctttc |
110 |
Q |
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| T |
42313556 |
cagagacaaggagagtctcatacttaatagagagatgtgcggagtattctccataccaataaaatccgggctatatttcacatccaaccataattctttc |
42313655 |
T |
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| Q |
111 |
taactgttccacaagcaggaagctaattggagcaagagctttctacaaaggttatgaggcatatgtaggcaaacttgatgcatcattttacactgcacgt |
210 |
Q |
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| T |
42313656 |
taactgttccacaagcaggaagctaattggagcaagagctttctacaaaggttatgaggcatatgtaggcaaacttgatgcatcattttacactgcacgt |
42313755 |
T |
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| Q |
211 |
gacacaataggccatggttctcacactctatcaacagctggtggtaatttcgttcaaggagtaagtgtttatggaaatggtaatggcactgcaaaaggtg |
310 |
Q |
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| T |
42313756 |
gacacaataggccatggttctcacactctatcaacagctggtggtaatttcgttcaaggagtaagtgtttatggaaatggtaatggcactgcaaaaggtg |
42313855 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 31108871 - 31108828
Alignment:
| Q |
220 |
ggccatggttctcacactctatcaacagctggtggtaatttcgt |
263 |
Q |
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| T |
31108871 |
ggccatggtactcacacactatcaacagctggtggaaatttcgt |
31108828 |
T |
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