View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12503_low_7 (Length: 269)

Name: NF12503_low_7
Description: NF12503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12503_low_7
NF12503_low_7
[»] chr4 (3 HSPs)
chr4 (7-256)||(26720494-26720743)
chr4 (7-256)||(52528748-52529020)
chr4 (7-68)||(52525561-52525622)
[»] chr2 (1 HSPs)
chr2 (7-254)||(2985640-2985891)
[»] chr1 (1 HSPs)
chr1 (11-256)||(45118150-45118397)
[»] chr8 (2 HSPs)
chr8 (77-256)||(13863532-13863716)
chr8 (28-68)||(13863465-13863505)
[»] chr7 (1 HSPs)
chr7 (7-85)||(37978803-37978881)
[»] chr6 (1 HSPs)
chr6 (112-153)||(23073266-23073307)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 26720743 - 26720494
Alignment:
Q  7 tcttctccgcctccacatctgtctccacctccgcaatgttcagaagatcagaaagcttctccgaattcacattcggtttcacattcgcatttgggtatca 106  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26720743 tcttctccgcctccacatctgtctccacctccgcaatgttcaaaagatcagaaagcttctccgaattcacattcggcttcacattcgcatttgggtatca 26720644  T
Q  107 gagaaagtagatgggaaggaaacgtggattgggaaattgagaaggggnnnnnnntgaccacatagaaggattaagatttttcttttccaagaagaagaaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||| ||| |||||||||||||||||||||||||||||||||||||    
T  26720643 gagaaagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaaatgacaacaaagaaggattaagatttttcttttccaagaagaagaaa 26720544  T
Q  207 gaaggatgaatgatggagagagtttgaaggaaaggagcattttacgatct 256  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26720543 gaaggatgaatgatggaaagagtttgaaggaaaggagcattttacgatct 26720494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 256
Target Start/End: Original strand, 52528748 - 52529020
Alignment:
Q  7 tcttctccgcctccacatctgtctccacctccgcaatgttcagaagatcagaaagcttctccgaattcacattc------------------ggtttcac 88  Q
    |||||||||||||| || |||||||||||||||| |||||||||||||| |||||||||||| | |||||||||                  ||||||||    
T  52528748 tcttctccgcctccgcacctgtctccacctccgccatgttcagaagatcggaaagcttctccaatttcacattcggtttcgagatttgattcggtttcac 52528847  T
Q  89 attcgcatttgggtatcagagaaagtagatgggaaggaaacgtggattgggaaattgagaaggggnnnnnnntgaccacatagaaggattaagatttttc 188  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||       |||| | | |||| |||||||||||||     
T  52528848 attcgcatttgggtaccagagagagtagatgggaaggaaacgtggattgggaaattgagaagggg-aaaaaatgacaatagagaatgattaagatttttt 52528946  T
Q  189 ttttccaagaagaagaa------agaaggatgaatgatggagagagtttgaaggaaaggagcattttacgatct 256  Q
    ||||  |||||||||||      |||||||||||||||||| || |||| |||||||||||||||||| |||||    
T  52528947 tttttgaagaagaagaagaagagagaaggatgaatgatggaaagggtttcaaggaaaggagcattttaggatct 52529020  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 52525561 - 52525622
Alignment:
Q  7 tcttctccgcctccacatctgtctccacctccgcaatgttcagaagatcagaaagcttctcc 68  Q
    |||||||||||||  | ||||||||||||||||| |||||||||||||| ||||||||||||    
T  52525561 tcttctccgcctcagcttctgtctccacctccgccatgttcagaagatcggaaagcttctcc 52525622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 2985891 - 2985640
Alignment:
Q  7 tcttctccgcctccacatctgtctccacctccgcaatgttcagaagatcagaaagcttctccgaattcacattcggtttcacattcgcatttgggtatca 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2985891 tcttctccgcctccacatctgtctccacctccgcaatgttcagaagattagaaagcttctccgaattcacattcggtttcacattcgcatttgggtatca 2985792  T
Q  107 gagaaagtagatgggaaggaaacgtggattgggaaattgagaaggggnnnnnnntgaccacatagaaggattaag----atttttcttttccaagaagaa 202  Q
    || |||||||||||||||||||| |||||||||||||||||||||||       |||| | | ||||||||| ||     ||||| ||||  | ||||||    
T  2985791 gataaagtagatgggaaggaaacatggattgggaaattgagaaggggaaaaaagtgacaatagagaaggattgagttttttttttttttttgaggaagaa 2985692  T
Q  203 gaaagaaggatgaatgatggagagagtttgaaggaaaggagcattttacgat 254  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2985691 aaaagaaggatgaatgatggaaagagtttgaaggaaaggagcattttacgat 2985640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 45118150 - 45118397
Alignment:
Q  11 ctccgcctccacatctgtctccacctccgcaatgttcagaagatcagaaagcttctccgaattcacattcggtttcacattcgcatttgggtatcagaga 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45118150 ctccgcctccacatctgtctccacctccgcaatgttcagaagattagaaagcttctccgaattcacattcggtttcacattcgcatttgggtatcagata 45118249  T
Q  111 aagtagatgggaaggaaacgtggattgggaaattgagaaggggnnnnnnntgaccacatagaaggattaag--atttttcttttccaagaagaagaaaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||| | | ||||||||| ||   ||||| ||||  | |||||| || ||    
T  45118250 aagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaagtgacaatagagaaggattgagttttttttttttttgaggaagaaaaagga 45118349  T
Q  209 aggatgaatgatggagagagtttgaaggaaaggagcattttacgatct 256  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||    
T  45118350 aggatgaatgatggaaagggtttgaaggaaaggagcattttacgatct 45118397  T

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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 77 - 256
Target Start/End: Original strand, 13863532 - 13863716
Alignment:
Q  77 attcggtttcacattcgcatttgggtatcagagaaagtagatgggaaggaaacgtggattgggaaattgagaaggggnnnnnnntgaccacatagaagga 176  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||       |||| |   |||| ||    
T  13863532 attcggtttcacattcgcatttgggtaccagagagagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaaatgacaattgagaatga 13863631  T
Q  177 ttaaga-----tttttcttttccaagaagaagaaagaaggatgaatgatggagagagtttgaaggaaaggagcattttacgatct 256  Q
    ||||||     ||||| ||||  ||||||||||||||||||||||||||||| || |||| ||||||||||| ||||||||||||    
T  13863632 ttaagattttttttttttttttgaagaagaagaaagaaggatgaatgatggaaagggtttcaaggaaaggagtattttacgatct 13863716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 13863465 - 13863505
Alignment:
Q  28 tctccacctccgcaatgttcagaagatcagaaagcttctcc 68  Q
    ||||| ||||||| |||||||||||||| ||||||||||||    
T  13863465 tctccgcctccgccatgttcagaagatcggaaagcttctcc 13863505  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 37978881 - 37978803
Alignment:
Q  7 tcttctccgcctccacatctgtctccacctccgcaatgttcagaagatcagaaagcttctccgaattcacattcggttt 85  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| || |||||| ||||    
T  37978881 tcttctccgcctccgcatctgtctccacctccgccatgttcagaagatcggaaagcttctccgattttacattcagttt 37978803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 23073266 - 23073307
Alignment:
Q  112 agtagatgggaaggaaacgtggattgggaaattgagaagggg 153  Q
    ||||||||||||||||||||| || |||||||||||||||||    
T  23073266 agtagatgggaaggaaacgtgtatggggaaattgagaagggg 23073307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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