View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12503_low_8 (Length: 259)

Name: NF12503_low_8
Description: NF12503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12503_low_8
NF12503_low_8
[»] chr5 (4 HSPs)
chr5 (18-217)||(35069918-35070111)
chr5 (17-68)||(35053628-35053679)
chr5 (100-149)||(35053683-35053732)
chr5 (107-141)||(41016447-41016481)
[»] scaffold0205 (1 HSPs)
scaffold0205 (156-212)||(21422-21478)
[»] chr1 (3 HSPs)
chr1 (103-151)||(16771297-16771345)
chr1 (156-238)||(43328447-43328529)
chr1 (100-133)||(5243303-5243336)
[»] chr8 (1 HSPs)
chr8 (161-225)||(6501488-6501552)
[»] chr4 (1 HSPs)
chr4 (98-133)||(4790786-4790821)
[»] chr2 (1 HSPs)
chr2 (94-132)||(19173875-19173913)
[»] chr7 (1 HSPs)
chr7 (100-133)||(10702453-10702486)
[»] chr3 (2 HSPs)
chr3 (156-237)||(26656716-26656797)
chr3 (100-133)||(31590498-31590531)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 35069918 - 35070111
Alignment:
Q  18 tgttcaacacaatgttacaatccattggtgagaatttcttcttcttaacttcaaaaaataattggaagtgaattattttgacctatgtagcaccgacact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35069918 tgttcaacacaatgttacaatccattggtgagaatttcttcttcttaacttcaaaaaataattggaagtgaattattttgacctatgtagcaccgacact 35070017  T
Q  118 tctgattgaaggtgtgcctagtgttcaacatgtggctcacacaacactgacatatgtggttacattgaattattttattatatcaaactattacaagtgt 217  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||      |||||| |||||||||||||||||||||||||||||||||    
T  35070018 tctgattgaaggtgtgtctagtgttcaacatgtgtctcacacaacactgacata------tacatttaattattttattatatcaaactattacaagtgt 35070111  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 35053628 - 35053679
Alignment:
Q  17 atgttcaacacaatgttacaatccattggtgagaatttcttcttcttaactt 68  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||||||||    
T  35053628 atgttgaacacaatgttacaatccactagtgagaatttcttcttcttaactt 35053679  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 35053683 - 35053732
Alignment:
Q  100 ctatgtagcaccgacacttctgattgaaggtgtgcctagtgttcaacatg 149  Q
    |||||||||||||||||||||||||||||||||| || |||| |||||||    
T  35053683 ctatgtagcaccgacacttctgattgaaggtgtgtctcgtgtccaacatg 35053732  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 41016447 - 41016481
Alignment:
Q  107 gcaccgacacttctgattgaaggtgtgcctagtgt 141  Q
    ||||||||||||||||||||||||||| |||||||    
T  41016447 gcaccgacacttctgattgaaggtgtgtctagtgt 41016481  T

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Target: scaffold0205 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 21478 - 21422
Alignment:
Q  156 acacaacactgacatatgtggttacattgaattattttattatatcaaactattaca 212  Q
    |||||||||||| | ||||||||||||| |||||||||||| | |||||||||||||    
T  21478 acacaacactgatacatgtggttacattcaattattttattttctcaaactattaca 21422  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 16771345 - 16771297
Alignment:
Q  103 tgtagcaccgacacttctgattgaaggtgtgcctagtgttcaacatgtg 151  Q
    ||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  16771345 tgtagcatcgacacttctgattgaaggtgtgtccagtgttcaacatgtg 16771297  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 43328529 - 43328447
Alignment:
Q  156 acacaacactgacatatgtggttacattgaattattttattatatcaaactattacaagtgtcaacgtgttactgtcgtgtct 238  Q
    |||| ||| ||||| ||||||||||||| |||||||| ||| | ||||| ||||| |||||||||||||| | ||| ||||||    
T  43328529 acacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtcagtgttgtgtct 43328447  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 5243336 - 5243303
Alignment:
Q  100 ctatgtagcaccgacacttctgattgaaggtgtg 133  Q
    ||||||||||||||||||||||||||||||||||    
T  5243336 ctatgtagcaccgacacttctgattgaaggtgtg 5243303  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 6501552 - 6501488
Alignment:
Q  161 acactgacatatgtggttacattgaattattttattatatcaaactattacaagtgtcaacgtgt 225  Q
    |||| |||| ||||||||||||| |||||||| ||| | ||||| |||||| |||||||||||||    
T  6501552 acaccgacacatgtggttacatttaattatttcattctctcaaattattaccagtgtcaacgtgt 6501488  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 4790821 - 4790786
Alignment:
Q  98 acctatgtagcaccgacacttctgattgaaggtgtg 133  Q
    |||| |||||||||||||||||||||||||||||||    
T  4790821 acctctgtagcaccgacacttctgattgaaggtgtg 4790786  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 19173913 - 19173875
Alignment:
Q  94 tttgacctatgtagcaccgacacttctgattgaaggtgt 132  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  19173913 tttgacttatgtagcaccgacacttcagattgaaggtgt 19173875  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 10702453 - 10702486
Alignment:
Q  100 ctatgtagcaccgacacttctgattgaaggtgtg 133  Q
    |||||| |||||||||||||||||||||||||||    
T  10702453 ctatgttgcaccgacacttctgattgaaggtgtg 10702486  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 237
Target Start/End: Original strand, 26656716 - 26656797
Alignment:
Q  156 acacaacactgacatatgtggttacattgaattattttattatatcaaactattacaagtgtcaacgtgttactgtcgtgtc 237  Q
    |||||||||  ||| |||||||||||||||||||||||||| |  |||| || |||   ||||||||||||| ||| |||||    
T  26656716 acacaacacaaacacatgtggttacattgaattattttatttttccaaattactactgttgtcaacgtgttagtgtggtgtc 26656797  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 31590498 - 31590531
Alignment:
Q  100 ctatgtagcaccgacacttctgattgaaggtgtg 133  Q
    ||||||||||| ||||||||||||||||||||||    
T  31590498 ctatgtagcactgacacttctgattgaaggtgtg 31590531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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