View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12503_low_9 (Length: 255)
Name: NF12503_low_9
Description: NF12503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12503_low_9 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 304232 - 304013
Alignment:
| Q |
18 |
aagggacaatcttgttgggttggagttgggaatgtgttgttaaagctaagcaatatgtgatcatgaggagaagtgggttcaaatatgatgatattgtctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
304232 |
aagggacaatcttgttgggttggagttgggaatgtgttgttaaagctaagcaatatgtgatcatgaggagaagtgggttcaaatatgatgatattgtctt |
304133 |
T |
|
| Q |
118 |
tgttacaagtgtggtggtcgtaataggtggtcttatacaagggaggcttctcttgaattctctgcacctgtttggttgctttgcatctttgatctatttt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
304132 |
tgttacaagtgtggtggtcgtaataggtggtcttatacaagggaggcttctcttgaattctctgcacctgtttggttgctttgcatctttgatctatctt |
304033 |
T |
|
| Q |
218 |
gtgagtacacctgtagtagt |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
304032 |
gtgagtacacctgtagtagt |
304013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 12465843 - 12465959
Alignment:
| Q |
122 |
acaagtgtggtggtcgtaataggtggtcttatacaagggaggcttctcttgaattctctgcacctgtttggttgctttgcatctttgatctattttgtga |
221 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||||||||| || | ||||||||| ||||| || ||||||| | |||||||||||| | |||||| |
|
|
| T |
12465843 |
acaagtgtggtgaccataataggttgtcttatacaagggaggtttttgttgaattctatgcacatgcttggttgttaggcatctttgatcaaacttgtga |
12465942 |
T |
|
| Q |
222 |
gtacacctgtagtagtt |
238 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12465943 |
gtacacctgtagtagtt |
12465959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 12465736 - 12465785
Alignment:
| Q |
18 |
aagggacaatcttgttgggttggagttgggaatgtgttgttaaagctaag |
67 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
12465736 |
aagggacattcttgttttgttggagttgggaatgtattattaaagctaag |
12465785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 479177 - 479063
Alignment:
| Q |
122 |
acaagtgtggtggtcgtaataggtggtcttatacaagggaggcttctcttgaattctctgcacctgtttggttgctttgcatctttgatctattttgtga |
221 |
Q |
| |
|
||||||||||||| | ||||| ||| |||||||||||||||| || ||||||||| | ||||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
479177 |
acaagtgtggtggccataataagtgatcttatacaagggaggattttcttgaattttatgcacttgtttggttgttttgcatctttgatcatacttgtga |
479078 |
T |
|
| Q |
222 |
gtacacctgtagtag |
236 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
479077 |
gtacacctatagtag |
479063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University