View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12504_high_1_N (Length: 444)
Name: NF12504_high_1_N
Description: NF12504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12504_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 6e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 35937693 - 35937537
Alignment:
| Q |
15 |
gattaggtattaggtaatattttgctatcattcgaaacttaactgtgtcgttactttcactctcacctaaacaaagaagtttctgacagacgcacacact |
114 |
Q |
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| T |
35937693 |
gattaggtattaggtaatattttgctatcatttgaaacttaactgtgtcgttactttcactctcacctaaacaaagaagtttctgacagacgcacacact |
35937594 |
T |
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| Q |
115 |
agttggacatataaaatgttaagaacgacatatcaactaaaaacttataattcttca |
171 |
Q |
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| T |
35937593 |
agttggacatataaaatgttaagaacgacatatcaactaaaaacttataattcttca |
35937537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 324 - 444
Target Start/End: Complemental strand, 35937380 - 35937260
Alignment:
| Q |
324 |
gctttgaataagtgctgcaaaaattaaaaccaagtattattgttgttcataaaaacgatcattgnnnnnnnnagggaaaaaacaatcattgttgttatcc |
423 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35937380 |
gctttgaataagtgctgcaaaaattaaaactaagtattattgttgttcttaaaaacgatcattgttttttttagggaaaaaacaatcattgttgttatcc |
35937281 |
T |
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| Q |
424 |
attatttataatccctctttt |
444 |
Q |
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||||||||||||||||||||| |
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| T |
35937280 |
attatttataatccctctttt |
35937260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 35937495 - 35937441
Alignment:
| Q |
209 |
taagaatatgttctaaccaaaatgtttggtagatatccgatatgtatatagactt |
263 |
Q |
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| T |
35937495 |
taagaatatgttctaaccaaaatgtttggtagatatccgatatgtatatagactt |
35937441 |
T |
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