View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12504_high_2 (Length: 380)
Name: NF12504_high_2
Description: NF12504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12504_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 369
Target Start/End: Original strand, 36746825 - 36747185
Alignment:
| Q |
9 |
tccaataatatgagagggaacttcaacctgcacaaataaattagatctacctattaagcaacagaataacactataaatcttaaatcaagataaataaca |
108 |
Q |
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| T |
36746825 |
tccaacaaaatgagagggaacttcaacctgcacaaataaattagatctacctattaagcaacagaataacactataaatcttaaatcaagataaataaca |
36746924 |
T |
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| Q |
109 |
ttggctaaaattctcaannnnnnnaccttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctg |
208 |
Q |
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| T |
36746925 |
ttggctaaaattctcaatttttttaccttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctg |
36747024 |
T |
|
| Q |
209 |
tgaactcttgaccactcttatttttgtagttcacacctttgatagttccattttcttcaagtaacgatgtaacggttccttgttctaatttaacactgca |
308 |
Q |
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| T |
36747025 |
tgaactcttgaccactcttatttttgtagttcacacctttgatagttccattttcttcaagtaacgatgtaacggttccttgttctaatttaacactgca |
36747124 |
T |
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| Q |
309 |
ttaatgcaagaaggattcaataaaacttaatcattgttagtgttgaagttcatatatgtaa |
369 |
Q |
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| T |
36747125 |
ttaatgcaagaaggattcaataaaacttaatcattgttagtgttgaagttcatatatgtaa |
36747185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 133 - 305
Target Start/End: Original strand, 12251744 - 12251916
Alignment:
| Q |
133 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctgtgaactcttgaccactcttatttt |
232 |
Q |
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| T |
12251744 |
accttaggtttgcaaagagaactcctcaagtttgaaaaacatccatcacatacaatagtgagaggagccttttcattgaactcttgtccactcttgtttt |
12251843 |
T |
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| Q |
233 |
tgtagttcacacctttgatagttccattttcttcaagtaacgatgtaacggttccttgttctaatttaacact |
305 |
Q |
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| T |
12251844 |
tgtaattcacccctatgatgcttccatttatttcaactaaagatgtgacagttccttgttctaattttacact |
12251916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 133 - 305
Target Start/End: Complemental strand, 12404242 - 12404070
Alignment:
| Q |
133 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctgtgaactcttgaccactcttatttt |
232 |
Q |
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| T |
12404242 |
accttaggtttgcaaagagaactcctcaaattagaaaaacagccatcgcatacaatagtgagaggagccttttcagtgaactcttgtccactcttgtttt |
12404143 |
T |
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| Q |
233 |
tgtagttcacacctttgatagttccattttcttcaagtaacgatgtaacggttccttgttctaatttaacact |
305 |
Q |
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| T |
12404142 |
tgtaattcacccctacgatgcttccatttttttcaaccaaagatgtgacagttccttgttctaattttacact |
12404070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 47791191 - 47791127
Alignment:
| Q |
133 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagagg |
197 |
Q |
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| T |
47791191 |
accttaggattacaaagagaacggcgcaagtttgagaaacaaccatcacaaacaatggtaagagg |
47791127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 271
Target Start/End: Original strand, 4767451 - 4767589
Alignment:
| Q |
133 |
accttaggattacaaagagaacgcctcaagttggaaaaacaaccatcacatactatggtgagaggagcctttgctgtgaactcttgaccactcttatttt |
232 |
Q |
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| T |
4767451 |
accttagggttgcaaagagaacgacgcaagtttgagaaacagccatcacaaacaatggtaagaggagcatatgctgtcaatgcctgaccatctttattct |
4767550 |
T |
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| Q |
233 |
tgtagttcacacctttgatagttccattttcttcaagta |
271 |
Q |
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| T |
4767551 |
tgtattgcacacctttgattgtccccttctcttcaagta |
4767589 |
T |
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