View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12504_high_3 (Length: 376)
Name: NF12504_high_3
Description: NF12504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12504_high_3 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 101 - 368
Target Start/End: Original strand, 6955666 - 6955939
Alignment:
| Q |
101 |
cttgttgaaatcgagttaggtcatcttgaatatcagcgattccaaaaatatctccttgtgaaaaacgaagttcaagatttgtccaaacagaggagacttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
6955666 |
cttgttgaaatcgagttaggtcatcttgaatatcagcaattcaaaaaatatccccttgtgaaaaacgaagttcaagatttggccaaacagaagagacttt |
6955765 |
T |
|
| Q |
201 |
gtcgatccataaaatggatttagaaatactttcagaaattgagcgttgaagccatgagagaaccatgttgttgcagcggatccatggctcgtgcaagaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6955766 |
gtcgatccataaaatggatttagaaatactttcagaaattgagcgttgaagccatgagagaaccatgttgttgcagcggatccatggctcgtgcaagaca |
6955865 |
T |
|
| Q |
301 |
ttcgtagatgaaggacattgaaaagtgccgtc------tcgaagcttgttcttagaaattagggctaccttcat |
368 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6955866 |
ttcgtagatgaaggacattgaaaactgccgtcgataaatcgaagcttgttcttagaaattagggctaccttcat |
6955939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 101 - 276
Target Start/End: Complemental strand, 22454942 - 22454767
Alignment:
| Q |
101 |
cttgttgaaatcgagttaggtcatcttgaatatcagcgattccaaaaatatctccttgtgaaaaacgaagttcaagatttgtccaaacagaggagacttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22454942 |
cttgttgaaatcgagttaggtcatcttgaatatcagcgattcaaaaaatatccccttgtgaaaaacgaagttcaagatttgtccaaacagaggaggcttt |
22454843 |
T |
|
| Q |
201 |
gtcgatccataaaatggatttagaaatactttcagaaattgagcgttgaagccatgagagaaccatgttgttgcag |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22454842 |
gtcgatccataaaatggatttagaaatactttcaaaaattgagcattgaagccatgagagaaccatgttgttgcag |
22454767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 10918 - 10812
Alignment:
| Q |
1 |
gcacctgtatccatgatccaaaggacagattgcttacccatttgtggagatgaaatggaatgaatggatgcagattggtaaaggacagagttggcagcag |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10918 |
gcacctgtatccatgatctaaaggacagattgcttacccatttgtggagatgaaatggaatgaatggatgcagattgggaaaggacagagttggcagcag |
10819 |
T |
|
| Q |
101 |
cttgttg |
107 |
Q |
| |
|
||||||| |
|
|
| T |
10818 |
cttgttg |
10812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University