View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12504_high_4 (Length: 351)
Name: NF12504_high_4
Description: NF12504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12504_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 32921844 - 32922066
Alignment:
| Q |
9 |
gattatactgaagagagaatatgtttttaaaatcggtagcaaatttggtgatttgcaaagaaggtgcgtcgtgatggttagatgttgatacttcatagct |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32921844 |
gattatattgaagagagaatatgtttttaaaatcggtagcaaatttggtgatttgcaaagaaggtgcgtcgtgatggttggatgttgatacttcatagct |
32921943 |
T |
|
| Q |
109 |
gtcattatttgttgcattgcataggaatatgatttctaaatccgaataaagttnnnnnnntaaactgtaaccaattgaaataaaaa-ggaaacagtttag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
32921944 |
gtcattatttgttgcattgcataggaatgtgatttctaaatccgaataaagtt-aaaaaataaactgtaacaaattgaaataaaaatggaaacattttag |
32922042 |
T |
|
| Q |
208 |
ctaatgcatatttgttataaaatt |
231 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
32922043 |
ctaatgcatatttgttataaaatt |
32922066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 223 - 351
Target Start/End: Original strand, 32922382 - 32922507
Alignment:
| Q |
223 |
tataaaattcaagcaggatgatgtttcctctcttgggattttttaaggtgaaaagtgaagcaaaagctcaaggcatgaaaatttgcatgctcttaatgtt |
322 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32922382 |
tataaaattcaagcaggatg---tttcctctcttgggattttgtaaggtgaaaagtgaagcaaaagctcaaggcatgaaaatttgcatgctcttaatgtt |
32922478 |
T |
|
| Q |
323 |
tccttacaaatgcagacagtggatctagg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
32922479 |
tccttacaaatgcagacagtggatctagg |
32922507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University