View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12504_low_1 (Length: 396)
Name: NF12504_low_1
Description: NF12504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12504_low_1 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 118 - 385
Target Start/End: Original strand, 6955666 - 6955939
Alignment:
| Q |
118 |
cttgttgaaatcgagttaggtcatcttgaatatcagcgattccaaaaatatctccttgtgaaaaacgaagttcaagatttgtccaaacagaggagacttt |
217 |
Q |
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| T |
6955666 |
cttgttgaaatcgagttaggtcatcttgaatatcagcaattcaaaaaatatccccttgtgaaaaacgaagttcaagatttggccaaacagaagagacttt |
6955765 |
T |
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| Q |
218 |
gtcgatccataaaatggatttagaaatactttcagaaattgagcgttgaagccatgagagaaccatgttgttgcagcggatccatggctcgtgcaagaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6955766 |
gtcgatccataaaatggatttagaaatactttcagaaattgagcgttgaagccatgagagaaccatgttgttgcagcggatccatggctcgtgcaagaca |
6955865 |
T |
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| Q |
318 |
ttcgtagatgaaggacattgaaaagtgccgtc------tcgaagcttgttcttagaaattagggctaccttcat |
385 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6955866 |
ttcgtagatgaaggacattgaaaactgccgtcgataaatcgaagcttgttcttagaaattagggctaccttcat |
6955939 |
T |
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Back To:
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Target: chr8 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 118 - 293
Target Start/End: Complemental strand, 22454942 - 22454767
Alignment:
| Q |
118 |
cttgttgaaatcgagttaggtcatcttgaatatcagcgattccaaaaatatctccttgtgaaaaacgaagttcaagatttgtccaaacagaggagacttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22454942 |
cttgttgaaatcgagttaggtcatcttgaatatcagcgattcaaaaaatatccccttgtgaaaaacgaagttcaagatttgtccaaacagaggaggcttt |
22454843 |
T |
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| Q |
218 |
gtcgatccataaaatggatttagaaatactttcagaaattgagcgttgaagccatgagagaaccatgttgttgcag |
293 |
Q |
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| T |
22454842 |
gtcgatccataaaatggatttagaaatactttcaaaaattgagcattgaagccatgagagaaccatgttgttgcag |
22454767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 10918 - 10812
Alignment:
| Q |
18 |
gcacctgtatccatgatccaaaggacagattgcttacccatttgtggagatgaaatggaatgaatggatgcagattggtaaaggacagagttggcagcag |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10918 |
gcacctgtatccatgatctaaaggacagattgcttacccatttgtggagatgaaatggaatgaatggatgcagattgggaaaggacagagttggcagcag |
10819 |
T |
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| Q |
118 |
cttgttg |
124 |
Q |
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||||||| |
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| T |
10818 |
cttgttg |
10812 |
T |
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