View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12505_high_1 (Length: 334)
Name: NF12505_high_1
Description: NF12505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12505_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 32601133 - 32600822
Alignment:
| Q |
17 |
cataggggatgggaagatccagctacatgggccaaaagtgtgggaaatagttggagaacaactggagatattgaagataactggaataggtaaaattaat |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32601133 |
cataggggatgggaagatcctgctacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaaaattaat |
32601034 |
T |
|
| Q |
117 |
atgataactcacttattttcttc-----------annnnnnnnnncattttcttcgagtaaacttaatattataactggaatagtnnnnnnnntcaatta |
205 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32601033 |
atgataactcacttattttcttcattttcttcatattttttttttcattttcttcgagtaaacttaatattataactggaatagtaaaaaaaatcaatta |
32600934 |
T |
|
| Q |
206 |
ttttcttcattttcttatattatgaccaactaactttattccatccc-tagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctgga |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32600933 |
ttttcttcattttcttatattatgaccaactaactttattccatcccttagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctgga |
32600834 |
T |
|
| Q |
305 |
cctggaggatgg |
316 |
Q |
| |
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|||||||||||| |
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| T |
32600833 |
cctggaggatgg |
32600822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 32590489 - 32590374
Alignment:
| Q |
200 |
caattattttcttcattttcttatattatgaccaactaactttattccatccctagcatgacttctataatagatgtaaatgacaaatgggcatcttatg |
299 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||| |
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| T |
32590489 |
caattattttcttcattttcctatattatgaccaactaactttattcc-tccctaggatgacttctataatagatgtaaacgataaatgggcatcttatg |
32590391 |
T |
|
| Q |
300 |
ctggacctggaggatgg |
316 |
Q |
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| T |
32590390 |
ctggacctggaggatgg |
32590374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 32590662 - 32590551
Alignment:
| Q |
17 |
cataggggatgggaagatccagctacatgggccaaaagtgtgggaaatagttggagaacaactggagatattgaagataactggaataggtaaaattaat |
116 |
Q |
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|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||||| |
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| T |
32590662 |
cataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaaaattaat |
32590563 |
T |
|
| Q |
117 |
atgataactcac |
128 |
Q |
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||||||| |||| |
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| T |
32590562 |
atgataattcac |
32590551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 24883380 - 24883434
Alignment:
| Q |
53 |
agtgtgggaaatagttggagaacaactggagatattgaagataactggaataggt |
107 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||| ||| |||||| |
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| T |
24883380 |
agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggt |
24883434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 34594181 - 34594089
Alignment:
| Q |
17 |
cataggggatgggaagatccagctacatgggccaaaagtgtgggaaatagttggagaacaactggagatattgaagataactggaataggtaa |
109 |
Q |
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||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| |
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| T |
34594181 |
cataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggtaa |
34594089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 34578478 - 34578391
Alignment:
| Q |
20 |
aggggatgggaagatccagctacatgggccaaaagtgtgggaaatagttggagaacaactggagatattgaagataactggaataggt |
107 |
Q |
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||||||||||||||||| || || |||||||||||||||||||||||||||||||| || || ||||| |||||||| ||||| |||| |
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| T |
34578478 |
aggggatgggaagatcctgcaacgtgggccaaaagtgtgggaaatagttggagaaccacgggtgatatagaagataattggaagaggt |
34578391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 34578196 - 34578134
Alignment:
| Q |
254 |
agcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatgg |
316 |
Q |
| |
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|||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
34578196 |
agcatgacttctattatagatgcaaacgacaaatgggcatcttatgctggacctggaggatgg |
34578134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 34593991 - 34593924
Alignment:
| Q |
249 |
tccctagcatgacttctataatagatgtaaatgacaaatgggcatcttatgctggacctggaggatgg |
316 |
Q |
| |
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|||||||||||||||||||| |||| ||| | ||||||||||| ||||||||||||||||||||| |
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| T |
34593991 |
tccctagcatgacttctatagcagattcaaacaataaatgggcatcgtatgctggacctggaggatgg |
34593924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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