View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12505_high_1_N (Length: 361)

Name: NF12505_high_1_N
Description: NF12505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12505_high_1_N
NF12505_high_1_N
[»] chr8 (2 HSPs)
chr8 (1-361)||(27223722-27224082)
chr8 (1-361)||(27227913-27228273)
[»] chr1 (9 HSPs)
chr1 (54-349)||(11547030-11547325)
chr1 (24-351)||(48652889-48653216)
chr1 (112-226)||(48639754-48639868)
chr1 (54-348)||(48618242-48618536)
chr1 (112-316)||(48661406-48661610)
chr1 (47-227)||(48628658-48628838)
chr1 (109-351)||(48666998-48667243)
chr1 (24-237)||(48656337-48656550)
chr1 (109-226)||(48585178-48585295)
[»] chr3 (1 HSPs)
chr3 (24-349)||(19665597-19665922)


Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 27223722 - 27224082
Alignment:
Q  1 atgtaaaccacagatgatggtgactttgagttcaaccactctataatacactcatcatcactcttaacaaaatcaccacagatattacttgcatttttaa 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27223722 atgtaaaccacagatgatggtggctttgagttcaaccactctatgatacactcatcatcactcttaacaaaatcaccacagatattacttgcatttttaa 27223821  T
Q  101 tttgtgggtttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27223822 tttgtgggtttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaac 27223921  T
Q  201 caatacacaaaacactttagacaagttgttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcg 300  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  27223922 caatacacaaaacactttagacaagttcttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatccgggatctca 27224021  T
Q  301 ttgtacttaagaactactgaggacaattgaacatcaatataaggttcttcaaccgaaggga 361  Q
    ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  27224022 ttgtacttaagaactacagaagacaattgaacatcaatatatggttcttcaaccgaaggga 27224082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 27227913 - 27228273
Alignment:
Q  1 atgtaaaccacagatgatggtgactttgagttcaaccactctataatacactcatcatcactcttaacaaaatcaccacagatattacttgcatttttaa 100  Q
    ||||| |||||||||||| ||| | ||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||      
T  27227913 atgtataccacagatgattgtggccttgagtttaaccactctataatacaatcatcatcactcttaactaaatcaccacagatattacttgcagtttttg 27228012  T
Q  101 tttgtgggtttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaac 200  Q
    ||| |||||||| ||| ||||||||||| |||||||||  ||| |||| ||| |||| ||| |  |||||||||||||| | ||||||||| ||||| ||    
T  27228013 tttttgggttttgaaataaaggaccaatgggtcttattaagacagaatattttgaaatataatttatgaaatcatgttccaattcctcataggtatccac 27228112  T
Q  201 caatacacaaaacactttagacaagttgttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcg 300  Q
    ||||||||||||||||||||||||||| ||||| ||||||| || || || |||||||| || | |  |||||||||  ||||  |||||||| || ||     
T  27228113 caatacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaacaatgaaggaaatctggtatttca 27228212  T
Q  301 ttgtacttaagaactactgaggacaattgaacatcaatataaggttcttcaaccgaaggga 361  Q
    ||||| ||||| ||||  || ||||||||||||||||||||||||||| ||  ||||||||    
T  27228213 ttgtatttaaggactagagaagacaattgaacatcaatataaggttctgcattcgaaggga 27228273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 54 - 349
Target Start/End: Original strand, 11547030 - 11547325
Alignment:
Q  54 atcatcactcttaacaaaatcaccacagatattacttgcatttttaatttgtgggtttttaaacaaaggaccaataggtcttattttgactgaattttta 153  Q
    ||||||||||||||||||||| ||||  ||||||||||||  |||||| | ||| ||||||||||| ||||||||||||||||| | ||  || |||||     
T  11547030 atcatcactcttaacaaaatctccacgaatattacttgcacctttaatatttggatttttaaacaatggaccaataggtcttatgtggatggattttttt 11547129  T
Q  154 gaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaaacactttagacaagttgttaatttgttccattatgattgtcc 253  Q
    | || |||||| |||||||||||||||||||| ||||| || || || || ||||||||||||||||| || || ||||  ||||| |  |||| |||||    
T  11547130 gtaatatagtcaatgaaatcatgttctagttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtcc 11547229  T
Q  254 caagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcgttgtacttaagaactactgaggacaattgaacatcaatataaggttctt 349  Q
    | |||| || | ||| |||||||   |||| |||||||||||| || ||||| ||||| |||    | |  |||||||||||||||||||||||||    
T  11547230 ctagaaatggatatggactaaaaggatgaagaaaatctgggatttcattgtatttaaggacttgaaaaggtaattgaacatcaatataaggttctt 11547325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 351
Target Start/End: Original strand, 48652889 - 48653216
Alignment:
Q  24 ctttgagttcaaccactctataatacactcatcatcactcttaacaaaatcaccacagatattacttgcatttttaatttgtgggtttttaaacaaagga 123  Q
    ||||||||| | |||||||||||||     |||||||||||||||||||||||||| ||||||  |||||  |||||| | || ||| |||||||| |||    
T  48652889 ctttgagtttagccactctataatattacaatcatcactcttaacaaaatcaccacggatattgtttgcacctttaatgtttgagttgttaaacaatgga 48652988  T
Q  124 ccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaaacactttagaca 223  Q
    ||||| ||||||||   || ||| || || |||| |||||| ||||||||||| |||||||| ||||| || || || || |||||||| |||||||| |    
T  48652989 ccaatgggtcttatgaggattgatttgtttgaaatatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagata 48653088  T
Q  224 agttgttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcgttgtacttaagaactactgagga 323  Q
    | || ||||||||||| |  | || ||||||||    |  |||||||||||||   || | |||||||||||| || || |  |||||||||||  | |     
T  48653089 aattcttaatttgttctaagacgagtgtcccaaatgatagaaatgtactaaaaggatgcagaaaatctgggatttcattatgtttaagaactacaaaagg 48653188  T
Q  324 caattgaacatcaatataaggttcttca 351  Q
     |||||||||||||||||||||||||||    
T  48653189 taattgaacatcaatataaggttcttca 48653216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 48639754 - 48639868
Alignment:
Q  112 ttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaa 211  Q
    |||||| |||||||||||||||||||  ||| ||| ||||| |||| ||| || ||||||||||| |||||||| ||||| ||||| || ||||||||||    
T  48639754 ttaaacgaaggaccaataggtcttatggtgattgatttttttgaaatataatctatgaaatcatgctctagttcttcataggtatccactaatacacaaa 48639853  T
Q  212 acactttagacaagt 226  Q
    |||||||||||||||    
T  48639854 acactttagacaagt 48639868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 348
Target Start/End: Complemental strand, 48618536 - 48618242
Alignment:
Q  54 atcatcactcttaacaaaatcaccacagatattacttgcatttttaatttgtgggtttttaaacaaaggaccaataggtcttattttgactgaattttta 153  Q
    ||||||||||||||||||||| ||||  |||||  |||||  |||||| | ||| || | |||||| |||||||| |||||||     | ||  |||||     
T  48618536 atcatcactcttaacaaaatctccacgaatattttttgcacctttaatatttggattgtgaaacaatggaccaatgggtcttacgaaaattgtttttttt 48618437  T
Q  154 gaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaaacactttagacaagttgttaatttgttccattatgattgtcc 253  Q
    |||| |||||| ||||||||||| |||||||| ||||| || || || || |||||||| ||||||||||| || ||||  ||||| |  |||| |||||    
T  48618436 gaaatatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagacaaattcttaaactgttctaagatgagtgtcc 48618337  T
Q  254 caagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcgttgtacttaagaactactgaggacaattgaacatcaatataaggttct 348  Q
    | |||| || ||||  |||||||   |||| |||||||||||| || ||||| |||||||||    | |  ||||||||||||||||||||||||    
T  48618336 ctagaaatggaaattgactaaaaggatgaagaaaatctgggatttcattgtatttaagaacttgaaaaggtaattgaacatcaatataaggttct 48618242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 316
Target Start/End: Original strand, 48661406 - 48661610
Alignment:
Q  112 ttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaa 211  Q
    |||||||||||||||| | |||||||  ||| ||| ||||| |||| ||| |||||||||||||| |||| ||| ||| | ||||| || ||||||||||    
T  48661406 ttaaacaaaggaccaacatgtcttatggtgattgatttttttgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccactaatacacaaa 48661505  T
Q  212 acactttagacaagttgttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcgttgtacttaag 311  Q
    |||||||||||| ||  || |||||| || |  | | |||||| ||||||| ||||| | |||||   || | | |||||||||| |||||||| |||||    
T  48661506 acactttagacatgtcctttatttgtgccgtggtaagtgtccctagaattggaaatggattaaaaggatgtatataatctgggatttcgttgtatttaag 48661605  T
Q  312 aacta 316  Q
    |||||    
T  48661606 aacta 48661610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 47 - 227
Target Start/End: Original strand, 48628658 - 48628838
Alignment:
Q  47 tacactcatcatcactcttaacaaaatcaccacagatattacttgcatttttaatttgtgggtttttaaacaaaggaccaataggtcttattttgactga 146  Q
    |||| |||||||| ||||||||||||||||| |  ||||| |||||   ||| |||  |||||| || |||| ||||||||| ||||| ||   ||||||    
T  48628658 tacaatcatcatcgctcttaacaaaatcacctcgaatattgcttgctgcttttattgttgggttcttgaacagaggaccaatgggtctaatgaggactga 48628757  T
Q  147 atttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaaacactttagacaagtt 227  Q
     ||||| |||| ||| |||||||||||||| |||||||| ||||| |||||  | ||||||||||| | ||| ||||||||    
T  48628758 ttttttggaaagataatcgatgaaatcatgctctagttcttcataggtatccgctaatacacaaaatattttggacaagtt 48628838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 351
Target Start/End: Original strand, 48666998 - 48667243
Alignment:
Q  109 tttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacac 208  Q
    |||||||||||||||||||  ||||||||   || ||| ||||  |||| ||| |||||||||||||| |||| ||| ||| | ||||| || |||||||    
T  48666998 tttttaaacaaaggaccaacgggtcttatggcgattgatttttccgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccactaatacac 48667097  T
Q  209 aaaacactttagacaagttgttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcgttgtactt 308  Q
    ||||||||||||||| ||  || || ||| || |  ||| |||||| ||||||| | || ||| ||||   || | |||||||||||| || ||||| ||    
T  48667098 aaaacactttagacatgtcctttatctgtgccgtggtgagtgtccctagaattggatatctacaaaaaggatgtataaaatctgggatttcattgtattt 48667197  T
Q  309 aagaactactgagga---caattgaacatcaatataaggttcttca 351  Q
    ||||||||  || ||    | |||||||||||||||||||||||||    
T  48667198 aagaactatagaagagttgagttgaacatcaatataaggttcttca 48667243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 48656337 - 48656550
Alignment:
Q  24 ctttgagttcaaccactctataatacactcatcatcactcttaacaaaatcaccacagatattacttgcatttttaatttgtgggtttttaaacaaagga 123  Q
    ||||||||| | |||||||||||||     ||||||| ||||||||||||||| ||  ||||||||||||  | | || | |||||| || ||||  |||    
T  48656337 ctttgagtttagccactctataatagtagaatcatcagtcttaacaaaatcacgacgaatattacttgcacctattatgtttgggttgttgaacaccgga 48656436  T
Q  124 ccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaaacactttagaca 223  Q
    ||||| ||||||||  ||| ||| ||||  |||| ||| ||||| |||||| | |||||||| ||||| ||||| || |||||||| ||  |||||||||    
T  48656437 ccaattggtcttatgatgattgacttttccgaaatataatcgataaaatcaggctctagttcttcataggtatccacaaatacacacaatgctttagaca 48656536  T
Q  224 agttgttaatttgt 237  Q
    | || |||||||||    
T  48656537 aattcttaatttgt 48656550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 48585178 - 48585295
Alignment:
Q  109 tttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacac 208  Q
    ||||||||  ||||||||| || ||||||   || ||| ||||| |||| ||| || ||||| ||||| |||||||| ||||| ||||| || |||||||    
T  48585178 tttttaaatgaaggaccaacagttcttatggggattgattttttcgaaatataatctatgaattcatgctctagttcttcataggtatccactaatacac 48585277  T
Q  209 aaaacactttagacaagt 226  Q
    ||||||||||||| ||||    
T  48585278 aaaacactttagataagt 48585295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 349
Target Start/End: Complemental strand, 19665922 - 19665597
Alignment:
Q  24 ctttgagttcaaccactctataatacactcatcatcactcttaacaaaatcaccacagatattacttgcatttttaatttgtgggtttttaaacaaagga 123  Q
    ||||||||| | |||||||||||||     |||||||||||||||||||||||| |  |||| ||| |||  |||||| | ||| || |||||||| |||    
T  19665922 ctttgagtttagccactctataatattacaatcatcactcttaacaaaatcaccgcgaatatcactcgcacatttaatctttggattattaaacaatgga 19665823  T
Q  124 ccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaaacactttagaca 223  Q
    || || || ||| |   || ||| ||||| |||| |||||||||| ||||||| |||||||| |||||  |||| ||||||||||||||||||||||| |    
T  19665822 ccgattggccttgtaaggattgattttttcgaaatatagtcgatgtaatcatgctctagttcatcataactatccaccaatacacaaaacactttagata 19665723  T
Q  224 agttgttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatctgggatctcgttgtacttaagaactactgagga 323  Q
    | || ||||  ||||| |  |||| |||||| |||| |||| || ||||||||   || | |||||| || || ||||| |  |||||| ||||  | |     
T  19665722 aattcttaaactgttctaaaatgagtgtccctagaaatgaatatttactaaaaggatgtagaaaatccggtatttcgttatgtttaagagctacgaaagg 19665623  T
Q  324 caattgaacatcaatataaggttctt 349  Q
     |||||| ||||||||||||||||||    
T  19665622 taattgagcatcaatataaggttctt 19665597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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