View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12506_high_3 (Length: 240)

Name: NF12506_high_3
Description: NF12506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12506_high_3
NF12506_high_3
[»] chr4 (10 HSPs)
chr4 (1-239)||(2741964-2742202)
chr4 (43-240)||(2741763-2741960)
chr4 (43-239)||(2741364-2741559)
chr4 (23-85)||(10355306-10355368)
chr4 (28-65)||(51536491-51536528)
chr4 (32-84)||(9322343-9322395)
chr4 (32-84)||(9334304-9334356)
chr4 (32-84)||(9376822-9376874)
chr4 (22-58)||(13584821-13584857)
chr4 (27-63)||(54441180-54441216)
[»] chr6 (5 HSPs)
chr6 (23-88)||(8493686-8493751)
chr6 (30-87)||(1955362-1955419)
chr6 (32-68)||(33099387-33099423)
chr6 (35-90)||(7337575-7337630)
chr6 (20-76)||(24341488-24341544)
[»] chr7 (3 HSPs)
chr7 (23-64)||(31580902-31580943)
chr7 (23-68)||(6856547-6856592)
chr7 (22-58)||(9718554-9718590)
[»] chr3 (3 HSPs)
chr3 (23-87)||(41816886-41816950)
chr3 (26-59)||(41148080-41148113)
chr3 (27-63)||(41817605-41817641)
[»] chr2 (5 HSPs)
chr2 (27-85)||(1465833-1465891)
chr2 (35-88)||(40288206-40288259)
chr2 (35-67)||(12027803-12027835)
chr2 (40-87)||(19853930-19853977)
chr2 (44-88)||(32650267-32650311)
[»] scaffold0736 (1 HSPs)
scaffold0736 (40-87)||(749-796)
[»] chr1 (3 HSPs)
chr1 (26-64)||(28016577-28016615)
chr1 (39-87)||(16234116-16234164)
chr1 (26-58)||(28981644-28981676)
[»] chr5 (3 HSPs)
chr5 (26-58)||(14717362-14717394)
chr5 (26-90)||(19117301-19117365)
chr5 (24-64)||(41018314-41018354)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 2742202 - 2741964
Alignment:
Q  1 gtttaaaataattgtacacacatggcaacacatcattagatgtatgtgtaaaataattgtacactgataaaatatactgattaaattcatctttcattcc 100  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  2742202 gtttaaaataattgtatacacatggcaacacatcattggatgtatgtgtaaaataattgtacactgacagaatatactgattaaattcatctttcattcc 2742103  T
Q  101 aaatctttagtggnnnnnnnnnnnnnnnnnnnnnncaaaataacgtgttttagaatttcaaaacaattataccctccatctttagtggttttagtatttt 200  Q
    |||||||||||||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2742102 aaatctttagtggtttttgtgttttatttttgtttcaaaataacgtgttttagaatttcaaaacaattataccctccatctttagtggttttagtatttt 2742003  T
Q  201 ataataattcggtgttagtttgttcgtcttgtctttcat 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2742002 ataataattcggtgttagtttgttcgtcttgtctttcat 2741964  T

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Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 2741960 - 2741763
Alignment:
Q  43 tatgtgtaaaataattgtacactgataaaatatactgattaaattcatctttcattccaaatctttagtggnnnnnnnnnnnnnnnnnnnnnncaaaata 142  Q
    |||||||||||||||||||||| || |||||||||| ||||||||| ||||||||||||||||||||||||                      |||||||    
T  2741960 tatgtgtaaaataattgtacaccgacaaaatatactaattaaattcttctttcattccaaatctttagtggtttttgtgttttatttttgtttcaaaata 2741861  T
Q  143 acgtgttttagaatttcaaaacaattataccctccatctttagtggttttagtattttataataattcggtgttagtttgttcgtcttgtctttcatc 240  Q
    |||||||||||||||| || |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2741860 acgtgttttagaattttaagacaactataccctccatctttaatggttttagtattttataataattcgatgttagtttgttcgtcttgtctttcatc 2741763  T

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Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 2741559 - 2741364
Alignment:
Q  43 tatgtgtaaaataattgtacactgataaaatatactgattaaattcatctttcattccaaatctttagtggnnnnnnnnnnnnnnnnnnnnnncaaaata 142  Q
    ||||||||||||||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||                      |||||||    
T  2741559 tatgtgtaaaataattgtacactgacaaaatatagtaattaaattcttctttcattccaaatctttagtggtttttgtgttttatttttgtttcaaaata 2741460  T
Q  143 acgtgttttagaatttcaaaacaattataccctccatctttagtggttttagtattttataataattcggtgttagtttgttcgtcttgtctttcat 239  Q
    ||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2741459 acgtgttttagaatttcaagacaactatacc-tccatctttagtggttttagtattttataataattcggtgttagtttgttcgtcttgtttttcat 2741364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 10355306 - 10355368
Alignment:
Q  23 tggcaacacatcattagatgtatgtgtaaaataattgtacactgataaaatatactgattaaa 85  Q
    ||||||||||| |||| |||||| |||||||||||| ||||| || |||| ||||| ||||||    
T  10355306 tggcaacacataattatatgtatatgtaaaataattatacaccgacaaaacatactaattaaa 10355368  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 51536491 - 51536528
Alignment:
Q  28 acacatcattagatgtatgtgtaaaataattgtacact 65  Q
    ||||||||||| || |||||||||||||||||||||||    
T  51536491 acacatcattaaatatatgtgtaaaataattgtacact 51536528  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 9322395 - 9322343
Alignment:
Q  32 atcattagatgtatgtgtaaaataattgtacactgataaaatatactgattaa 84  Q
    |||| ||||| ||| ||||||||||||||||||| | |||||||||| |||||    
T  9322395 atcagtagatatatatgtaaaataattgtacactaacaaaatatactaattaa 9322343  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 9334356 - 9334304
Alignment:
Q  32 atcattagatgtatgtgtaaaataattgtacactgataaaatatactgattaa 84  Q
    |||| ||||| ||| ||||||||||||||||||| | |||||||||| |||||    
T  9334356 atcagtagatatatatgtaaaataattgtacactaacaaaatatactaattaa 9334304  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 9376874 - 9376822
Alignment:
Q  32 atcattagatgtatgtgtaaaataattgtacactgataaaatatactgattaa 84  Q
    |||| ||||| ||| ||||||||||||||||||| | |||||||||| |||||    
T  9376874 atcagtagatatatatgtaaaataattgtacactaacaaaatatactaattaa 9376822  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 13584821 - 13584857
Alignment:
Q  22 atggcaacacatcattagatgtatgtgtaaaataatt 58  Q
    |||| |||||||||||||||| |||||||||||||||    
T  13584821 atggaaacacatcattagatgcatgtgtaaaataatt 13584857  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 54441216 - 54441180
Alignment:
Q  27 aacacatcattagatgtatgtgtaaaataattgtaca 63  Q
    |||||||||||||||| || |||||||||||||||||    
T  54441216 aacacatcattagatgcatatgtaaaataattgtaca 54441180  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 8493751 - 8493686
Alignment:
Q  23 tggcaacacatcattagatgtatgtgtaaaataattgtacactgataaaatatactgattaaattc 88  Q
    ||||||| |||||||||||||||||||||||||||||||||| || | | |||||| |||||||||    
T  8493751 tggcaacgcatcattagatgtatgtgtaaaataattgtacaccgacatattatacttattaaattc 8493686  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 1955362 - 1955419
Alignment:
Q  30 acatcattagatgtatgtgtaaaataattgtacactgataaaatatactgattaaatt 87  Q
    |||| |||| |||||||||||||||||||||||||||| ||  |||||| ||||||||    
T  1955362 acataattaaatgtatgtgtaaaataattgtacactgacaatgtatactaattaaatt 1955419  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 33099423 - 33099387
Alignment:
Q  32 atcattagatgtatgtgtaaaataattgtacactgat 68  Q
    ||||||||||| |||||||||||||||||||||||||    
T  33099423 atcattagatgaatgtgtaaaataattgtacactgat 33099387  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 7337630 - 7337575
Alignment:
Q  35 attagatgtatgtgtaaaataattgtacactgataaaatatactgattaaattcat 90  Q
    ||||||||  ||||||||||||||||||||| | |||||||||| |||||| ||||    
T  7337630 attagatgcttgtgtaaaataattgtacactcacaaaatatactaattaaactcat 7337575  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 24341488 - 24341544
Alignment:
Q  20 acatggcaacacatcattagatgtatgtgtaaaataattgtacactgataaaatata 76  Q
    ||||| ||||| ||||||||||| || ||||||||||||||||| ||| ||| ||||    
T  24341488 acatgtcaacatatcattagatgcatatgtaaaataattgtacaatgagaaagtata 24341544  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 31580943 - 31580902
Alignment:
Q  23 tggcaacacatcattagatgtatgtgtaaaataattgtacac 64  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  31580943 tggcaacacatcattagatatatgtgtaaaataattgtacac 31580902  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 6856592 - 6856547
Alignment:
Q  23 tggcaacacatcattagatgtatgtgtaaaataattgtacactgat 68  Q
    |||||||||| |||| |||| |||||||||||| ||||||||||||    
T  6856592 tggcaacacaccatttgatgcatgtgtaaaatagttgtacactgat 6856547  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 9718554 - 9718590
Alignment:
Q  22 atggcaacacatcattagatgtatgtgtaaaataatt 58  Q
    |||| |||||||||||||||| |||||||||||||||    
T  9718554 atggaaacacatcattagatgcatgtgtaaaataatt 9718590  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 41816950 - 41816886
Alignment:
Q  23 tggcaacacatcattagatgtatgtgtaaaataattgtacactgataaaatatactgattaaatt 87  Q
    |||||||| || |||| ||| || ||||||||||||||| || ||||||||||||||||||||||    
T  41816950 tggcaacaaattattaaatgcatttgtaaaataattgtaaaccgataaaatatactgattaaatt 41816886  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 41148080 - 41148113
Alignment:
Q  26 caacacatcattagatgtatgtgtaaaataattg 59  Q
    |||||||||||||||||| |||||||||||||||    
T  41148080 caacacatcattagatgtgtgtgtaaaataattg 41148113  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 41817605 - 41817641
Alignment:
Q  27 aacacatcattagatgtatgtgtaaaataattgtaca 63  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  41817605 aacacatcattaaatgtatgtgtaaaataaatgtaca 41817641  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 1465833 - 1465891
Alignment:
Q  27 aacacatcattagatgtatgtgtaaaataattgtacactgataaaatatactgattaaa 85  Q
    ||||||||||| |||| |||||||||||||||||||||||||  | |||||| ||||||    
T  1465833 aacacatcattggatgcatgtgtaaaataattgtacactgatcgagtatactaattaaa 1465891  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 40288206 - 40288259
Alignment:
Q  35 attagatgtatgtgtaaaataattgtacactgataaaatatactgattaaattc 88  Q
    |||| |||||||||||||||||||||| | | | ||||||||||||||||||||    
T  40288206 attaaatgtatgtgtaaaataattgtatattaacaaaatatactgattaaattc 40288259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 12027803 - 12027835
Alignment:
Q  35 attagatgtatgtgtaaaataattgtacactga 67  Q
    |||||||||||||||||||||||||||||||||    
T  12027803 attagatgtatgtgtaaaataattgtacactga 12027835  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 19853930 - 19853977
Alignment:
Q  40 atgtatgtgtaaaataattgtacactgataaaatatactgattaaatt 87  Q
    ||||||||||||| ||||| ||||| ||||||||||||| ||||||||    
T  19853930 atgtatgtgtaaactaattatacaccgataaaatatactaattaaatt 19853977  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 32650267 - 32650311
Alignment:
Q  44 atgtgtaaaataattgtacactgataaaatatactgattaaattc 88  Q
    ||||||||||||||| |||||| ||||| |||||| |||||||||    
T  32650267 atgtgtaaaataattatacactcataaactatactaattaaattc 32650311  T

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Target: scaffold0736 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0736
Description:

Target: scaffold0736; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 796 - 749
Alignment:
Q  40 atgtatgtgtaaaataattgtacactgataaaatatactgattaaatt 87  Q
    ||||||||||||| ||||| ||||| ||||||||||||| ||||||||    
T  796 atgtatgtgtaaactaattatacaccgataaaatatactaattaaatt 749  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 28016615 - 28016577
Alignment:
Q  26 caacacatcattagatgtatgtgtaaaataattgtacac 64  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  28016615 caacacatcattgaatgtatgtgtaaaataattgtacac 28016577  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 16234116 - 16234164
Alignment:
Q  39 gatgtatgtgtaaaataattgtacactgataaaatatactgattaaatt 87  Q
    ||||||| ||||||||||||||||| ||| |||||||| | ||||||||    
T  16234116 gatgtatatgtaaaataattgtacagtgacaaaatatattaattaaatt 16234164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 28981676 - 28981644
Alignment:
Q  26 caacacatcattagatgtatgtgtaaaataatt 58  Q
    ||||||||||||| |||||||||||||||||||    
T  28981676 caacacatcattaaatgtatgtgtaaaataatt 28981644  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 14717362 - 14717394
Alignment:
Q  26 caacacatcattagatgtatgtgtaaaataatt 58  Q
    ||||||||||||||||| |||||||||||||||    
T  14717362 caacacatcattagatgcatgtgtaaaataatt 14717394  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 19117301 - 19117365
Alignment:
Q  26 caacacatcattagatgtatgtgtaaaataattgtacactgataaaatatactgattaaattcat 90  Q
    |||||||| ||| |||| |||||||||||||||||||| ||| | |||||| | |||||| ||||    
T  19117301 caacacattattggatgcatgtgtaaaataattgtacattgacataatatattaattaaactcat 19117365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 41018314 - 41018354
Alignment:
Q  24 ggcaacacatcattagatgtatgtgtaaaataattgtacac 64  Q
    ||||||||||||||||||| ||||||||||  |||||||||    
T  41018314 ggcaacacatcattagatgcatgtgtaaaactattgtacac 41018354  T

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