View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12506_low_1 (Length: 678)

Name: NF12506_low_1
Description: NF12506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12506_low_1
NF12506_low_1
[»] chr6 (15 HSPs)
chr6 (18-665)||(27587563-27588210)
chr6 (144-315)||(26061233-26061406)
chr6 (144-315)||(26081203-26081376)
chr6 (161-315)||(25487985-25488141)
chr6 (219-315)||(27659637-27659733)
chr6 (168-307)||(27599556-27599691)
chr6 (170-317)||(26808001-26808150)
chr6 (349-413)||(27312866-27312930)
chr6 (349-407)||(25487868-25487926)
chr6 (349-413)||(27700879-27700943)
chr6 (562-613)||(25079912-25079963)
chr6 (349-407)||(26061116-26061174)
chr6 (349-407)||(26081086-26081144)
chr6 (572-665)||(26909871-26909964)
chr6 (349-389)||(27659788-27659828)
[»] chr2 (2 HSPs)
chr2 (144-298)||(17988758-17988906)
chr2 (303-416)||(17989340-17989453)
[»] chr4 (1 HSPs)
chr4 (348-431)||(5083591-5083674)


Alignment Details
Target: chr6 (Bit Score: 636; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 18 - 665
Target Start/End: Original strand, 27587563 - 27588210
Alignment:
Q  18 gtttgtgccgggcaatacaattctgtaaggaatttataataaaaatcatcatcacatattactaacaacaaaaataattacccagaaaaacatgtacttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27587563 gtttgtgccgggcaatacaattctgtaaggaatttataataaaaatcatcatcacatattactaacaacaaaaataattacccagaaaaacatgtacttc 27587662  T
Q  118 tacaagcaagtaaaacatagaaatttattatccaaggttgccatccagaatttacatgtacttctacatgtattgattctacaagctaatccttgcttgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27587663 tacaagcaagtaaaacatagaaatttattatccaaggttgccatccagaatttacatgtacttctacatgtattgattctacaagctaatccttgcttgt 27587762  T
Q  218 aaacatacagtaatgaaagcatcaaattcaaacaatatctgcagcacaaacatcctccacaaaaccttacatcaggtctcactatatcaataccagagca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27587763 aaacatacagtaatgaaagcatcaaattcaaacaatatctgcagcacaaacatcctccacaaaaccttacatcaggtctcactatatcaataccagagca 27587862  T
Q  318 ccgtagtttgattcttaagaacggaagtcgtgactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacattgcttcctgt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27587863 ccgtagtttgattcttaagaacggaagtcgtgactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacattacttcctgt 27587962  T
Q  418 acatcagaaagctcattaccatagttgcttcaacctggtatgcacattttacataaatcaaataataataatagtaattgctcacaatatagcagcaaaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27587963 acatcagaaagctcattaccatagttgcttcaacctggtatgcacattttacataaatcaaataataataatagtaattactcacaatatagcagcaaaa 27588062  T
Q  518 actttagtgtagaaacactcttcacattcagcagaaaacatatccatttctccgttatagcttagaaacagtggagagatatctccatagtccttttaag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27588063 actttagtgtagaaacactcttcacattcagcagaaaacatatccatttctccgttatagcttagaaacagtggagagatatctccatagtccttttaag 27588162  T
Q  618 ttctactaaatatctatgtcgaaagtcaagacacctagtaaacagtga 665  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27588163 ttctactaaatatctatgtcgaaagtcaaaacacctagtaaacagtga 27588210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 144 - 315
Target Start/End: Complemental strand, 26061406 - 26061233
Alignment:
Q  144 attatccaaggttgccatccagaatttacatgtacttctacat--gtattgattctacaagctaatccttgcttgtaaacatacagtaatgaaagcatca 241  Q
    |||||||||||||| | |||| |||||||||||||||||| |   || || |||||| || ||||| | ||| | ||||  |||||||||||||  |||     
T  26061406 attatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaaataatcg 26061307  T
Q  242 aattcaaacaatatctgcagcacaaacatcctccacaaaaccttacatcaggtctcactatatcaataccagag 315  Q
    |||||||||||||| |||||||||||||||||||| ||||  |||||||||||||||| ||||||| |||||||    
T  26061306 aattcaaacaatatatgcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagag 26061233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 144 - 315
Target Start/End: Complemental strand, 26081376 - 26081203
Alignment:
Q  144 attatccaaggttgccatccagaatttacatgtacttctacat--gtattgattctacaagctaatccttgcttgtaaacatacagtaatgaaagcatca 241  Q
    |||||||||||||| | |||| |||||||||||||||||| |   || || |||||| || ||||| | ||| | ||||  |||||||||||||  |||     
T  26081376 attatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaaataatcg 26081277  T
Q  242 aattcaaacaatatctgcagcacaaacatcctccacaaaaccttacatcaggtctcactatatcaataccagag 315  Q
    |||||||||||||| |||||||||||||||||||| ||||  |||||||||||||||| ||||||| |||||||    
T  26081276 aattcaaacaatatatgcagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagag 26081203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 161 - 315
Target Start/End: Complemental strand, 25488141 - 25487985
Alignment:
Q  161 tccagaatttacatgtacttctacat--gtattgattctacaagctaatccttgcttgtaaacatacagtaatgaaagcatcaaattcaaacaatatctg 258  Q
    |||| |||||||||||||||||| |   || || |||||| || ||||| | ||| | ||||  |||||||||||||  ||| |||||||||||||| ||    
T  25488141 tccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaaataatcgaattcaaacaatatttg 25488042  T
Q  259 cagcacaaacatcctccacaaaaccttacatcaggtctcactatatcaataccagag 315  Q
    |||||||||||||||||| ||||  |||||||||||||||| ||||||| |||||||    
T  25488041 cagcacaaacatcctccataaaaaattacatcaggtctcaccatatcaaaaccagag 25487985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 27659637 - 27659733
Alignment:
Q  219 aacatacagtaatgaaagcatcaaattcaaacaatatctgcagcacaaacatcctccacaaaaccttacatcaggtctcactatatcaataccagag 315  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||  |||| ||||||||| ||||||| |||| || |||||||    
T  27659637 aacatacaataatgaaagaatcaaattcaaacaatatctgtagcacaaacatcctccttaaaaacttacatcatgtctcaccatataaaaaccagag 27659733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 168 - 307
Target Start/End: Original strand, 27599556 - 27599691
Alignment:
Q  168 tttacatgtacttctacat--gtattgattctacaagctaatccttgcttgtaaacatacagtaatgaaagcatcaaattcaaacaatatctgcagcaca 265  Q
    ||||||||||||||||||   ||||| |||| |||| ||| | | | ||||||||| ||||||||||||||||||||||||      |||||||||||||    
T  27599556 tttacatgtacttctacaatggtattaattccacaacctattgcattcttgtaaacctacagtaatgaaagcatcaaattc------tatctgcagcaca 27599649  T
Q  266 aacatcctccacaaaaccttacatcaggtctcactatatcaa 307  Q
    | ||||||||  |||| |||||||||||| |||| |||||||    
T  27599650 agcatcctccctaaaaacttacatcaggtatcaccatatcaa 27599691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 26808150 - 26808001
Alignment:
Q  170 tacatgtacttctac-atg-tattgattctacaagctaatccttgcttgtaaacatacagtaatgaaagcatcaaattcaaacaatatctgcagcacaaa 267  Q
    ||||||||||||||| ||| |||| ||||||||||||||| | || |||||||| |||| |||| ||| | | |||||||||||||||||||| ||||||    
T  26808150 tacatgtacttctaccatgctattcattctacaagctaatgcatgtttgtaaacgtacattaattaaatcgtaaaattcaaacaatatctgcaacacaaa 26808051  T
Q  268 catcctccacaaaaccttacatcaggtctcactatatcaataccagagca 317  Q
    |||||  |  || | | |||||| |||||||| || |||| |||||||||    
T  26808050 catccgtcgtaagaacatacatcgggtctcaccatttcaagaccagagca 26808001  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 27312866 - 27312930
Alignment:
Q  349 gactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacattgcttc 413  Q
    ||||| ||||||||||||| ||||||||||||| | ||||| ||||||||||| |||||| ||||    
T  27312866 gactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattacttc 27312930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 407
Target Start/End: Complemental strand, 25487926 - 25487868
Alignment:
Q  349 gactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacat 407  Q
    ||||| ||||||||||||| || |||||||||| ||||||| | |||||||||||||||    
T  25487926 gactcttgcaaaaggatctcatgaatgtcggttctcagatttatttctttatcccacat 25487868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 27700879 - 27700943
Alignment:
Q  349 gactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacattgcttc 413  Q
    ||||| ||||||||||||| |||||||| |||| | ||||| ||||||||||| |||||| ||||    
T  27700879 gactcttgcaaaaggatctcataaatgttggttcttagatttagttctttatcacacattacttc 27700943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 613
Target Start/End: Complemental strand, 25079963 - 25079912
Alignment:
Q  562 catttctccgttatagcttagaaacagtggagagatatctccatagtccttt 613  Q
    ||||||||| |||||||||||||| || ||||||||||||| | ||||||||    
T  25079963 catttctccattatagcttagaaagagcggagagatatctctacagtccttt 25079912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 407
Target Start/End: Complemental strand, 26061174 - 26061116
Alignment:
Q  349 gactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacat 407  Q
    ||||| ||||||||||||| || |||||||||| || |||| | |||||||||||||||    
T  26061174 gactcttgcaaaaggatctcatgaatgtcggttctcggatttatttctttatcccacat 26061116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 407
Target Start/End: Complemental strand, 26081144 - 26081086
Alignment:
Q  349 gactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacat 407  Q
    ||||| ||||||||||||| || |||||||||| || |||| | |||||||||||||||    
T  26081144 gactcttgcaaaaggatctcatgaatgtcggttctcggatttatttctttatcccacat 26081086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 665
Target Start/End: Complemental strand, 26909964 - 26909871
Alignment:
Q  572 ttatagcttagaaacagtggagagatatctccatagtccttttaagttctactaaatatctatgtcgaaagtcaagacacctagtaaacagtga 665  Q
    |||||||||||||||  | |||||| ||||| ||| | ||||  |||||||| |||||||||||||  ||||||  | |||||||||| |||||    
T  26909964 ttatagcttagaaaccatagagagaaatctctatattactttctagttctaccaaatatctatgtcagaagtcagaagacctagtaaatagtga 26909871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 27659788 - 27659828
Alignment:
Q  349 gactcatgcaaaaggatcttataaatgtcggttgtcagatt 389  Q
    ||||| ||||||||||||| ||||||||||||| |||||||    
T  27659788 gactcttgcaaaaggatctcataaatgtcggttatcagatt 27659828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 144 - 298
Target Start/End: Original strand, 17988758 - 17988906
Alignment:
Q  144 attatccaaggttgccatccagaatttacatgtacttctacat--gtattgattctacaagctaatccttgcttgtaaacatacagtaatgaaagcatca 241  Q
    ||||||||| |||| | ||||||||||||||| |||||||||   ||||||| || |||||||||||| ||||||||        |||||||||||||||    
T  17988758 attatccaaagttggcctccagaatttacatgaacttctacaatggtattgactccacaagctaatccatgcttgta--------gtaatgaaagcatca 17988849  T
Q  242 aattcaaacaatatctgcagcacaaacatcctccacaaaaccttacatcaggtctca 298  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||||||| |||||    
T  17988850 aattcaaacaatatctcgagcacaagcatcctccacaaaaccttacatcagctctca 17988906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 303 - 416
Target Start/End: Original strand, 17989340 - 17989453
Alignment:
Q  303 atcaataccagagcaccgtagtttgattcttaagaacggaagtcgtgactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcc 402  Q
    ||||| ||| |||||| | |||| ||||||  |||||  |||||||||||| ||| ||||||||  |||||||| |||| ||||||||||||||||||||    
T  17989340 atcaagaccggagcacggcagttggattctggagaacacaagtcgtgactcttgccaaaggatcggataaatgttggttctcagattcagttctttatcc 17989439  T
Q  403 cacattgcttcctg 416  Q
    |||||| |||||||    
T  17989440 cacattacttcctg 17989453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 348 - 431
Target Start/End: Complemental strand, 5083674 - 5083591
Alignment:
Q  348 tgactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacattgcttcctgtacatcagaaagctc 431  Q
    |||||| ||||||||||||| ||||||||| ||| | ||||| ||||||||||| | |||| |||| |||| ||||||||||||    
T  5083674 tgactcttgcaaaaggatctcataaatgtcagttcttagatttagttctttatcacgcattacttcttgtagatcagaaagctc 5083591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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