View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12506_low_2 (Length: 338)
Name: NF12506_low_2
Description: NF12506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12506_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 2742319 - 2742624
Alignment:
| Q |
17 |
aaaaacaaaatctgtgtgatatatctaatttgccgtatgtgacactaacatgagttatggaataattaattcaattccctaagaattgcactgaattaca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2742319 |
aaaaacaaaatctgtgtgatatatctaatttgccgtatgtgacattaacatgagttatggaataattaattcaattccctaagaattgcactacattaca |
2742418 |
T |
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| Q |
117 |
agagtgaggagaataatttttcatgatataagaccttacatgacaacagctgctagtattggtctcaagttactcctacaagtctaggatactggtaata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2742419 |
agagtgaggagaataatttttcatgatataagaccttacatgacaacaggtgctagtattggtctcaagttactcctacaagtctaggatactggtaata |
2742518 |
T |
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| Q |
217 |
ttaatatgcactacattatatacatatatgcaaaatgtcatgaaaatgctaagcaatgttccaagcttgcataataaaccaataaaaaatttcctcagcc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2742519 |
ttaatatgcactacattatatacatatatgcaaaatgtcatgaaaatgctaagcaatgttccaagcttgcataataaaccaataaaaaa-ttcctcagcc |
2742617 |
T |
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| Q |
317 |
aattagt |
323 |
Q |
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||||||| |
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| T |
2742618 |
aattagt |
2742624 |
T |
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