View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12506_low_3 (Length: 307)

Name: NF12506_low_3
Description: NF12506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12506_low_3
NF12506_low_3
[»] chr1 (5 HSPs)
chr1 (13-291)||(4679031-4679309)
chr1 (15-79)||(15594662-15594726)
chr1 (15-118)||(34467264-34467367)
chr1 (230-284)||(15594455-15594509)
chr1 (231-291)||(29465262-29465322)
[»] chr7 (27 HSPs)
chr7 (13-124)||(10494848-10494959)
chr7 (13-286)||(13333842-13334118)
chr7 (18-198)||(1300970-1301150)
chr7 (13-191)||(8666932-8667113)
chr7 (13-125)||(8658945-8659057)
chr7 (15-218)||(8545122-8545325)
chr7 (13-125)||(8654032-8654144)
chr7 (15-123)||(6789096-6789204)
chr7 (49-124)||(8671608-8671683)
chr7 (69-184)||(8616201-8616316)
chr7 (15-105)||(8537638-8537728)
chr7 (230-283)||(8586400-8586453)
chr7 (237-286)||(8646295-8646344)
chr7 (237-289)||(1300873-1300925)
chr7 (237-286)||(3146682-3146731)
chr7 (237-289)||(8658778-8658830)
chr7 (15-122)||(8581285-8581392)
chr7 (13-123)||(8590222-8590332)
chr7 (18-124)||(29578151-29578257)
chr7 (231-283)||(8616136-8616188)
chr7 (15-125)||(3146846-3146956)
chr7 (237-291)||(8666829-8666883)
chr7 (15-53)||(29582317-29582355)
chr7 (212-285)||(8653863-8653936)
chr7 (15-51)||(8569967-8570003)
chr7 (15-115)||(8575918-8576018)
chr7 (69-125)||(8586236-8586292)
[»] chr2 (8 HSPs)
chr2 (15-191)||(43624928-43625104)
chr2 (15-125)||(16657993-16658103)
chr2 (15-125)||(16662468-16662578)
chr2 (15-123)||(11998992-11999100)
chr2 (230-285)||(16658214-16658269)
chr2 (231-285)||(7541645-7541699)
chr2 (229-286)||(43624830-43624887)
chr2 (226-286)||(12246096-12246156)
[»] chr4 (5 HSPs)
chr4 (13-191)||(9336365-9336546)
chr4 (15-173)||(30774786-30774944)
chr4 (237-286)||(9336595-9336644)
chr4 (231-286)||(30774670-30774725)
chr4 (15-63)||(23597061-23597109)
[»] chr5 (2 HSPs)
chr5 (15-126)||(28219499-28219610)
chr5 (237-291)||(28219331-28219385)
[»] chr8 (2 HSPs)
chr8 (231-291)||(43744229-43744289)
chr8 (15-67)||(12528144-12528196)
[»] chr3 (1 HSPs)
chr3 (238-286)||(53416761-53416809)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 4679031 - 4679309
Alignment:
Q  13 cagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccatt 112  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679031 cagatgaggctgttgcttatggtgcagctatccaagctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccatt 4679130  T
Q  113 gtcacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagacagaagaatatgctacccgtgaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679131 gtcacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagacagaagaatatgctacccgtgaa 4679230  T
Q  213 gataattctggtaccttaattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttg 291  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679231 gataattctgatacctttattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttg 4679309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 15594726 - 15594662
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgt 79  Q
    ||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||||| |||||    
T  15594726 gatgaggctgttgcttatggtgcagctgtccaggctgctttgttgagtgaaggttttaaaaatgt 15594662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 34467264 - 34467367
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgt 114  Q
    ||||||||||| |||||||  |||||| | || |||||| | |||||  |||| ||||| ||||| || || || ||||||||||||||||| |||||||    
T  34467264 gatgaggctgtcgcttatgtcgcagctgtgcaagctgctttgttgagtaaaggctttaacaatgttccaaacttggtgctgcgagatgttacaccattgt 34467363  T
Q  115 cact 118  Q
    ||||    
T  34467364 cact 34467367  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 15594509 - 15594455
Alignment:
Q  230 aattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggt 284  Q
    |||| |||||||||||||||||||||||||||| |  ||||| ||| ||||||||    
T  15594509 aattcaggtttatgagggtgagagagcaagagctagtgacaataatttgcttggt 15594455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 29465322 - 29465262
Alignment:
Q  231 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttg 291  Q
    |||| ||| ||||||||||||||||||||||| |  |||||  ||||||||||||| ||||    
T  29465322 attagggtatatgagggtgagagagcaagagctagtgacaattatctgcttggttcatttg 29465262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 10494848 - 10494959
Alignment:
Q  13 cagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccatt 112  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||| || ||||| |||||||||||||||||    
T  10494848 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccatt 10494947  T
Q  113 gtcacttggtat 124  Q
    ||||||||||||    
T  10494948 gtcacttggtat 10494959  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 13333842 - 13334118
Alignment:
Q  13 cagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccatt 112  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||| ||||||||| || ||||| |||||||||| ||||||    
T  13333842 cagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagactgtcccgaacttggtgctacgagatgttatcccatt 13333941  T
Q  113 gtcacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagac---agaagaatatgctacccgt 209  Q
     |||||||||||    ||  ||||| ||| ||||| ||| ||||||||||| || |||||  | ||| ||||||||||   || || ||||  |||   |    
T  13333942 atcacttggtatttcagtatatgaacatatcatgaatgttgtgattcctaggaacacttccatccctgtcaagaagactaaaggaggatattatacagct 13334041  T
Q  210 gaagataattctggtaccttaattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 286  Q
    |||||||||| | ||  ||  ||| | || ||||||||||||||||||||||| |  ||||| ||||| ||||||||    
T  13334042 gaagataattgttgtgtctctattgatgtatatgagggtgagagagcaagagctagtgacaataatctacttggttc 13334118  T

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Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 1301150 - 1300970
Alignment:
Q  18 gaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgtcac 117  Q
    |||||||||||||||||||||||||| || ||||||||||| ||| |||| || ||||||||||| || || ||||||| ||||||||||||||||||||    
T  1301150 gaggctgttgcttatggtgcagctattcaagctgctattttaagcaaaggattcaagaatgtcccaaacttggtgctgcaagatgttaccccattgtcac 1301051  T
Q  118 ttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagacagaagaat 198  Q
    ||||||||   || | |||  ||  |||||||||||||||||| || || ||| | |||||| ||| ||||||| ||||||    
T  1301050 ttggtatcgcagtaggtgatcatgtcatgagtgtggtgattccaaggaacactaccgtgcctgtcaggaagacaaaagaat 1300970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 8667113 - 8666932
Alignment:
Q  13 cagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccatt 112  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||| ||||| | |||||||||||| || || ||||| |||||||| ||||| ||    
T  8667113 cagacgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctgtaagaatgtccccaacttggtgctacgagatgtgaccccttt 8667014  T
Q  113 gtcacttggtatccttgt---tgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagaca 191  Q
    ||||||||||||   |||   |  |||| ||| |||||||||||||||||||||||| |||||  | ||| |||||||||||    
T  8667013 gtcacttggtatttctgtaagtattgaacatatcatgagtgtggtgattcctagaaacacttccatacctgtcaagaagaca 8666932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 8659057 - 8658945
Alignment:
Q  13 cagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccatt 112  Q
    ||||||||||||||||||||||||||||| | || |||||| |||| ||| |||| |||||||||||||| || || ||||||| |||||||||||||||    
T  8659057 cagatgaggctgttgcttatggtgcagctcttcaagctgctgttttaagcaaaggctttaagaatgtcccaaacttggtgctgcaagatgttaccccatt 8658958  T
Q  113 gtcacttggtatc 125  Q
    |||||||||||||    
T  8658957 gtcacttggtatc 8658945  T

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Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 8545325 - 8545122
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgt 114  Q
    ||||||||||||||||||||||||||| ||||||||||| |  |||| ||||    |||||||||||| ||  | ||||| |||||||||||||| ||||    
T  8545325 gatgaggctgttgcttatggtgcagctgtccaggctgctttgctgagtgaagacaataagaatgtcccaaacatggtgctacgagatgttacccctttgt 8545226  T
Q  115 cacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagacagaagaatatgctacccgtgaaga 214  Q
    ||||||||||| || |  | | | |||  |||||||||||||||||| | ||||||||||| ||  ||||||||||| |||  ||| ||||| |||||||    
T  8545225 cacttggtatctttatacacggaaatattatgagtgtggtgattccttggaatacttctgtaccattcaagaagacacaagtttattctaccggtgaaga 8545126  T
Q  215 taat 218  Q
    ||||    
T  8545125 taat 8545122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 8654144 - 8654032
Alignment:
Q  13 cagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccatt 112  Q
    ||||||||||| |||| ||||| || ||| | ||||||||||||||||| ||||  |||||||||||||| || || ||||| || ||||||||||||||    
T  8654144 cagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaagactttaagaatgtccccaacttggtgctacgtgatgttaccccatt 8654045  T
Q  113 gtcacttggtatc 125  Q
    |||||||||||||    
T  8654044 gtcacttggtatc 8654032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 6789204 - 6789096
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgt 114  Q
    ||||||||||||||||| ||||||||| ||||||||||| | ||||||||||| | ||||| ||| || || || ||||||| ||||||||| || ||||    
T  6789204 gatgaggctgttgcttacggtgcagctgtccaggctgctttgttgagcgaaggctctaagagtgttccaaacttggtgctgcaagatgttacaccgttgt 6789105  T
Q  115 cacttggta 123  Q
    | |||||||    
T  6789104 ctcttggta 6789096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 8671608 - 8671683
Alignment:
Q  49 ctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgtcacttggtat 124  Q
    |||||||||||||| |||| |||||||||||||| || || ||||| ||||||||||| |||||||||||||||||    
T  8671608 ctgctattttgagcaaaggctttaagaatgtccccaacttggtgctacgagatgttacgccattgtcacttggtat 8671683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 184
Target Start/End: Complemental strand, 8616316 - 8616201
Alignment:
Q  69 tttaagaatgtcccgaattttgtgctgcgagatgttaccccattgtcacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaata 168  Q
    ||||||||||| || || || | ||||||||||||||||||  |||||||||||||| | ||  | | |||||  |||||||||||||||||||| ||||    
T  8616316 tttaagaatgttccaaacttggcgctgcgagatgttacccctctgtcacttggtatcttagtcaaaggagatattatgagtgtggtgattcctaggaata 8616217  T
Q  169 cttctgtgcctatcaa 184  Q
    ||||||| ||| ||||    
T  8616216 cttctgtacctgtcaa 8616201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 8537728 - 8537638
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgtta 105  Q
    ||||| ||||||||||||||||| ||| ||||||||||| | ||||||| |||  |||||| ||| ||||| || ||||||||||||||||    
T  8537728 gatgaagctgttgcttatggtgctgctgtccaggctgctttgttgagcggaggcattaagactgttccgaacttggtgctgcgagatgtta 8537638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 8586400 - 8586453
Alignment:
Q  230 aattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttgg 283  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||||||||||    
T  8586400 aattaaggtttatgagggtgagagagcaagagctagtgacaacaatctgcttgg 8586453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 8646344 - 8646295
Alignment:
Q  237 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 286  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  8646344 gtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttc 8646295  T

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Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 1300925 - 1300873
Alignment:
Q  237 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtt 289  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  1300925 gtttatgagggtgagagagcaagagcgcaagacaacaatctgcttggttcgtt 1300873  T

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Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 3146731 - 3146682
Alignment:
Q  237 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 286  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  3146731 gtttatgagggtgagagagcaagagctagtgacaacaatctgcttggttc 3146682  T

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Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 8658830 - 8658778
Alignment:
Q  237 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtt 289  Q
    ||||| ||||||||||||||||||||   ||||||||||||||||||||||||    
T  8658830 gtttacgagggtgagagagcaagagcgctagacaacaatctgcttggttcgtt 8658778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 8581392 - 8581285
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgt 114  Q
    ||||||||||||||||||||||| ||||| ||||||||| |  | || |||||  |||||| ||| || || ||  |  ||||||||||||| |||||||    
T  8581392 gatgaggctgttgcttatggtgctgctattcaggctgctttggttagtgaaggcattaagagtgttccaaacttgattttgcgagatgttacaccattgt 8581293  T
Q  115 cacttggt 122  Q
    ||||||||    
T  8581292 cacttggt 8581285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 8590332 - 8590222
Alignment:
Q  13 cagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccatt 112  Q
    ||||||||||||||||||||||||||||| | || |||||| |  |  | || ||  |||||||||| || ||||| ||||| | ||||||||| |||||    
T  8590332 cagatgaggctgttgcttatggtgcagctgttcaagctgctttgctttgtgatgggattaagaatgttcctaatttggtgctacaagatgttactccatt 8590233  T
Q  113 gtcacttggta 123  Q
    ||| |||||||    
T  8590232 gtctcttggta 8590222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 29578151 - 29578257
Alignment:
Q  18 gaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgtcac 117  Q
    |||||||||||||||||||||||| | ||||||||| | ||||  || ||  |||||||||| || ||||| ||  |||||||| |||| || ||||| |    
T  29578151 gaggctgttgcttatggtgcagctgtgcaggctgctttgttgattgatggcattaagaatgttccaaatttggtcttgcgagatattacacccttgtcgc 29578250  T
Q  118 ttggtat 124  Q
    |||||||    
T  29578251 ttggtat 29578257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 8616188 - 8616136
Alignment:
Q  231 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttgg 283  Q
    |||||| ||||||||||||||||| ||||||| |  |||||||||||||||||    
T  8616188 attaagttttatgagggtgagagatcaagagctagtgacaacaatctgcttgg 8616136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 3146956 - 3146846
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgt 114  Q
    |||||||| |||||||||||||||||| | || |||||| | ||||| ||||  ||||| ||||| || || || ||| ||| ||||||| | || ||||    
T  3146956 gatgaggccgttgcttatggtgcagctgtgcaagctgctttgttgagtgaagactttaaaaatgttccaaacttggtggtgcaagatgttgctcctttgt 3146857  T
Q  115 cacttggtatc 125  Q
    | |||||||||    
T  3146856 ctcttggtatc 3146846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 8666883 - 8666829
Alignment:
Q  237 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttg 291  Q
    |||||||||||||||||| |||||||  | ||||| |||||||||||||| ||||    
T  8666883 gtttatgagggtgagagaccaagagctgctgacaataatctgcttggttcatttg 8666829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 29582317 - 29582355
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgct 53  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  29582317 gatgaggctgttgcttatggtgcagctgtgcaggctgct 29582355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 8653936 - 8653863
Alignment:
Q  212 agataattctggtaccttaattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggtt 285  Q
    |||||||| |||| |||  ||||  |||||||||||||||||| ||||||| |  ||||| |||||||||||||    
T  8653936 agataattgtggtgcctctattattgtttatgagggtgagagaccaagagctagtgacaataatctgcttggtt 8653863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 8570003 - 8569967
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctg 51  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  8570003 gatgaggctgttgcttacggtgcagctattcaggctg 8569967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 8576018 - 8575918
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgt 114  Q
    ||||||||||||||||||||||| | | |||| |||||| | ||||| |||||   ||||||||| || || || ||| | ||||||||||| || ||||    
T  8576018 gatgaggctgttgcttatggtgctgttgtccaagctgctttgttgagtgaaggcagtaagaatgttccaaacttggtgttacgagatgttacaccgttgt 8575919  T
Q  115 c 115  Q
    |    
T  8575918 c 8575918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 8586236 - 8586292
Alignment:
Q  69 tttaagaatgtcccgaattttgtgctgcgagatgttaccccattgtcacttggtatc 125  Q
    |||||||| || || || || ||||||||||||||||||||  ||||||||||||||    
T  8586236 tttaagaaagttccaaacttggtgctgcgagatgttacccctctgtcacttggtatc 8586292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 43625104 - 43624928
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgt 114  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||  ||||  |||||||||| || || || |||||||||||||||||||| ||||    
T  43625104 gatgaggctgttgcttatggtgcagctgtccaggctgctattttgagtaaaggcattaagaatgttccaaaattggtgctgcgagatgttacccctttgt 43625005  T
Q  115 cacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagaca 191  Q
    ||||||||||| |     | | || |  ||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  43625004 cacttggtatcttaaacaagggaggtgtcatgagtgtggtgattcctaggaatacttctgtacctgtcaagaagaca 43624928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 16657993 - 16658103
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgt 114  Q
    ||||| ||||||||||| ||||||||| | || |||||||||||||| ||||| ||||||||||||||  |||| ||| || ||||||||||||||||||    
T  16657993 gatgaagctgttgcttacggtgcagctgttcaagctgctattttgagtgaaggctttaagaatgtcccagatttggtgttgagagatgttaccccattgt 16658092  T
Q  115 cacttggtatc 125  Q
    | |||||||||    
T  16658093 cgcttggtatc 16658103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 16662468 - 16662578
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgt 114  Q
    |||||||||||||||||||| |||||| | || |||||| | ||||| |||||  ||||| |||| || || || ||||||||||| |||||||||||||    
T  16662468 gatgaggctgttgcttatggggcagctgtgcaagctgctgtgttgagtgaaggcattaaggatgttccaaacttggtgctgcgagacgttaccccattgt 16662567  T
Q  115 cacttggtatc 125  Q
    |||||||||||    
T  16662568 cacttggtatc 16662578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 11999100 - 11998992
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgt 114  Q
    ||||||||||| |||||||| |||||| | || |||||| | ||||| |||| | |||||||||| || ||||| ||| |||  |||||||| || ||||    
T  11999100 gatgaggctgtagcttatggggcagctgttcaagctgctttgttgagtgaagatgttaagaatgttccaaatttggtgttgcaggatgttactcctttgt 11999001  T
Q  115 cacttggta 123  Q
    | |||||||    
T  11999000 ctcttggta 11998992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 16658214 - 16658269
Alignment:
Q  230 aattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggtt 285  Q
    |||||| ||||||||||||||||||||||||||  | ||||| |||||||| ||||    
T  16658214 aattaatgtttatgagggtgagagagcaagagctgctgacaataatctgctcggtt 16658269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 7541699 - 7541645
Alignment:
Q  231 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggtt 285  Q
    ||||| |||||||||||||||||||||||||| |  || |||||| |||||||||    
T  7541699 attaatgtttatgagggtgagagagcaagagccagtgataacaatttgcttggtt 7541645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 43624887 - 43624830
Alignment:
Q  229 taattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 286  Q
    ||||| ||||||||||| ||||||||||| ||| ||  |||||||||||| |||||||    
T  43624887 taattgaggtttatgagtgtgagagagcatgagtaagtgacaacaatctgattggttc 43624830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 12246096 - 12246156
Alignment:
Q  226 ccttaattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 286  Q
    |||| ||||||||||| |||||||||||| ||| ||| |  ||||||||| ||||||||||    
T  12246096 ccttgattaaggtttacgagggtgagagaacaaaagccagtgacaacaatttgcttggttc 12246156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 9336365 - 9336546
Alignment:
Q  13 cagatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccatt 112  Q
    ||||||||||||||||||||||||||||| | || |||||||||||||| ||||| ||||||||||  || || || ||||| |||||||||||||||||    
T  9336365 cagatgaggctgttgcttatggtgcagctgttcaagctgctattttgagtgaaggctttaagaatgcgcccaacttggtgctacgagatgttaccccatt 9336464  T
Q  113 gtcacttggtatc----cttgttgatgaagataccatgagtgtggtgattcctagaaatacttctgtgcctatcaagaagaca 191  Q
    |||||||||||||    | |  | | ||| ||| |||||||||||||||||||||||| |||||  | ||| |||||||||||    
T  9336465 gtcacttggtatcgcaacat-ataaggaaaatatcatgagtgtggtgattcctagaaacacttccatacctgtcaagaagaca 9336546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 30774944 - 30774786
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgt 114  Q
    |||||||| |||||| | || |||||| ||||||||||| | ||||| |||||  ||||||||| ||| || || |||||||||||||| ||||| ||||    
T  30774944 gatgaggcagttgctcacggggcagctgtccaggctgctctattgagtgaaggcattaagaatgccccaaagttggtgctgcgagatgtcacccctttgt 30774845  T
Q  115 cacttggtatccttgttgatgaagataccatgagtgtggtgattcctagaaatacttct 173  Q
    ||||||||||    ||  || |||| ||||||  |||||| |||||||| |||||||||    
T  30774844 cacttggtatttcagtgaatcaagacaccatggatgtggtaattcctaggaatacttct 30774786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 9336595 - 9336644
Alignment:
Q  237 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 286  Q
    |||||||||||||||||| ||||||| || ||||| ||||||||||||||    
T  9336595 gtttatgagggtgagagaccaagagctactgacaataatctgcttggttc 9336644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 30774725 - 30774670
Alignment:
Q  231 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 286  Q
    ||||| |||||||||||||||||||||||||   | |||||||||||||| |||||    
T  30774725 attaatgtttatgagggtgagagagcaagagtcgcggacaacaatctgctaggttc 30774670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 23597061 - 23597109
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcg 63  Q
    |||||||||||||||||||| || ||  |||| ||||||||||||||||    
T  23597061 gatgaggctgttgcttatggcgctgcagtccaagctgctattttgagcg 23597109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 28219610 - 28219499
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttaccccattgt 114  Q
    ||||||||||||||||||||||||||| | ||||||||| | ||||| ||||| ||||| || || ||||| || ||||||| ||||||||| || ||||    
T  28219610 gatgaggctgttgcttatggtgcagctgtgcaggctgctttgttgagtgaaggctttaaaaaagttccgaagttggtgctgcaagatgttacacctttgt 28219511  T
Q  115 cacttggtatcc 126  Q
    | ||||||||||    
T  28219510 ctcttggtatcc 28219499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 28219385 - 28219331
Alignment:
Q  237 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttg 291  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||| ||||    
T  28219385 gtttatgagggtgagagagcaaaagcaagtgacaacaatctgcttggttcttttg 28219331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 43744289 - 43744229
Alignment:
Q  231 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttg 291  Q
    ||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  43744289 attaaagtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttcttttg 43744229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 12528196 - 12528144
Alignment:
Q  15 gatgaggctgttgcttatggtgcagctatccaggctgctattttgagcgaagg 67  Q
    ||||||||||||||||||||||| ||| | ||||||||| | ||||| |||||    
T  12528196 gatgaggctgttgcttatggtgccgctgttcaggctgctttgttgagtgaagg 12528144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 53416761 - 53416809
Alignment:
Q  238 tttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 286  Q
    ||||||||||||||||| ||||||| || ||||| ||||||||||||||    
T  53416761 tttatgagggtgagagaccaagagctactgacaataatctgcttggttc 53416809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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