View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12507_high_1 (Length: 446)
Name: NF12507_high_1
Description: NF12507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12507_high_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 48453949 - 48453522
Alignment:
| Q |
19 |
ttcaaatcatgatatcaatgcagaagatattgagttcatccgtatgtcatcatgctatgtcatatcctgcgacttcacgatgtatataaaactgagttcg |
118 |
Q |
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| T |
48453949 |
ttcaaatcatgatatcaatgcagaagatattgagttcatccttatgtcatcatgctatttcatatcctgcgacttcaggatgtatataaaactgagttcg |
48453850 |
T |
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| Q |
119 |
atagttttccttaagctcacttcattggagtactatggatatgattttgataacttgaacattaataacccattgttgaacagcattcacttccttaaat |
218 |
Q |
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| T |
48453849 |
atagttttccttaagctcacttcattggagtactatggatatgattttgataacttgaacattaataacccattgttgaacagcattcacttccttaaat |
48453750 |
T |
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| Q |
219 |
cttaatgcatttgctctctttgccactcttcctgaacttgagattatgcttatgcaattggacttctattcaaaggttagtaataaagtgtcggaatagt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48453749 |
cttaatgcatttgctctctttgccactcttcctgaacttgagattatgcttatgcaattggacttctattcaaaggttagtaataaagtgttggaatagt |
48453650 |
T |
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| Q |
319 |
gaattgttcacatttctctctcttttgaatgatannnnnnnaagcttacatttttctattatggtcccaacttctctaaatataactcagccactcaaca |
418 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48453649 |
gaattgttcacatttctttctcttttgaatgatatttttttaagcttacatttttctattctggtcccaacttctctaaatataactcagccactcaaca |
48453550 |
T |
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| Q |
419 |
catcttaagcagctgaatttcatctttt |
446 |
Q |
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||||||||||||||||| |||||||||| |
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| T |
48453549 |
catcttaagcagctgaagttcatctttt |
48453522 |
T |
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