View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12507_low_3 (Length: 244)
Name: NF12507_low_3
Description: NF12507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12507_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 36364838 - 36364668
Alignment:
| Q |
17 |
acaaaccgcctgaccacaccgatgtcaagaagactaagaactatgttttccctaattgctaaatcgtgtctcattcaaagccttcaaaacttaaatcggt |
116 |
Q |
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| T |
36364838 |
acaaaccgcctgaccacaccgatgtcaagaagactaagaactatgttttccctaattgctaaatcgtgtctcattcaaagccttcaattactaaatcggt |
36364739 |
T |
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| Q |
117 |
gatgatgaggatacatttttcacattccatttttctcagaatcaaccaaatgaattaaataaccaaattcc |
187 |
Q |
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| T |
36364738 |
gatgatgaggatacatttttcacattccatttttctcagaatcaaccaaacgaattaaataaccaaattcc |
36364668 |
T |
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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 187
Target Start/End: Complemental strand, 36391085 - 36390979
Alignment:
| Q |
81 |
cgtgtctcattcaaagccttcaaaacttaaatcggtgatgatgaggatacatttttcacattccatttttctcagaatcaaccaaatgaattaaataacc |
180 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||| |||| |||| ||||| |||||| ||| | |
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| T |
36391085 |
cgtgtctcattcaaagccttcacttactcaatcggtgatgatgaggatacacttttcacattctatttgcctcacaatctgccaaacgaattatctaaac |
36390986 |
T |
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| Q |
181 |
aaattcc |
187 |
Q |
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| T |
36390985 |
aaattcc |
36390979 |
T |
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