View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12507_low_5 (Length: 224)

Name: NF12507_low_5
Description: NF12507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12507_low_5
NF12507_low_5
[»] chr8 (2 HSPs)
chr8 (124-207)||(26520932-26521016)
chr8 (11-45)||(34314252-34314286)
[»] chr3 (1 HSPs)
chr3 (124-207)||(34826614-34826697)
[»] chr7 (1 HSPs)
chr7 (163-205)||(12139076-12139118)
[»] chr1 (2 HSPs)
chr1 (168-205)||(41466284-41466321)
chr1 (170-204)||(45320528-45320562)
[»] chr5 (1 HSPs)
chr5 (11-48)||(24242305-24242342)


Alignment Details
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 207
Target Start/End: Complemental strand, 26521016 - 26520932
Alignment:
Q  124 caattaagtttttaataagtc-attaatcannnnnnngtttcaagtgcaattccaaacaaaaccaatggcaacctgtttgacttg 207  Q
    ||||||||||||||||||||| ||||||||       || |||||||||||||||||||||||||||||||||||||||||||||    
T  26521016 caattaagtttttaataagtccattaatcatttttttgtctcaagtgcaattccaaacaaaaccaatggcaacctgtttgacttg 26520932  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 34314286 - 34314252
Alignment:
Q  11 agagaagaagagattcttgtgttgatgttgtgttg 45  Q
    ||||||||||||||| |||||||||||||||||||    
T  34314286 agagaagaagagattgttgtgttgatgttgtgttg 34314252  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 207
Target Start/End: Original strand, 34826614 - 34826697
Alignment:
Q  124 caattaagtttttaataagtcattaatcannnnnnngtttcaagtgcaattccaaacaaaaccaatggcaacctgtttgacttg 207  Q
    |||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||| |||||||||| |||||    
T  34826614 caattaagtttttaataagtcattaatcatttttttgtctcaagtgcaattccaaacaaaaccaatgacaacctgtttaacttg 34826697  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 12139076 - 12139118
Alignment:
Q  163 tcaagtgcaattccaaacaaaaccaatggcaacctgtttgact 205  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  12139076 tcaactgcaattccaaacaaaaccaatggcaacctgtttgact 12139118  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 41466321 - 41466284
Alignment:
Q  168 tgcaattccaaacaaaaccaatggcaacctgtttgact 205  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41466321 tgcaattccaaacaaaaccaatggcaacctgtttgact 41466284  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 45320562 - 45320528
Alignment:
Q  170 caattccaaacaaaaccaatggcaacctgtttgac 204  Q
    |||||||||||||||||||||||||| ||||||||    
T  45320562 caattccaaacaaaaccaatggcaacttgtttgac 45320528  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 24242342 - 24242305
Alignment:
Q  11 agagaagaagagattcttgtgttgatgttgtgttgctg 48  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  24242342 agagaagaagagattgttgtgttgatgttgtgttgctg 24242305  T

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