View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12508_high_13 (Length: 212)
Name: NF12508_high_13
Description: NF12508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12508_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 35781962 - 35782141
Alignment:
| Q |
19 |
agggcgtagaaagattgagatcaaaaagcttgaaaaagaaaccaacaaacaagtcactttctcaaaaagaagacaaggtttattccgaaaagcgagtgaa |
118 |
Q |
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| T |
35781962 |
agggcgtagaaagattgagatcaaaaagcttgaaaaagaaaccaacaagcaagtcactttctcaaaaagaagacaaggtttattccgaaaagcgagtgaa |
35782061 |
T |
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| Q |
119 |
ctttgcactttatgtgatgttcatgcagccatcatcgtgttttctcctgccggcaaactacactgtttcggtgaaccaaa |
198 |
Q |
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| T |
35782062 |
ctttgcactttatgtgatgttcatgcagccatcatcgtgttttctcctgctggcaaactacactgtttcggtgaaccaaa |
35782141 |
T |
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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 52740989 - 52740851
Alignment:
| Q |
29 |
aagattgagatcaaaaagcttgaaaaagaaaccaacaaacaagtcactttctcaaaaagaagacaaggtttattccgaaaagcgagtgaactttgcactt |
128 |
Q |
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| T |
52740989 |
aagattgagatcaagaaggttgagaaagaatcacagaaacaagtgactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtct |
52740890 |
T |
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| Q |
129 |
tatgtgatgttcatgcagccatcatcgtgttttctcctg |
167 |
Q |
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| T |
52740889 |
tatgtgatgttcatgcagccatcattgtgttttctcctg |
52740851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 13539592 - 13539498
Alignment:
| Q |
29 |
aagattgagatcaaaaagcttgaaaaagaaaccaacaaacaagtcactttctcaaaaagaagacaaggtttattccgaaaagcgagtgaactttg |
123 |
Q |
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| T |
13539592 |
aagatcgagatcaagaagattgacaaagcatcgaacagacaagtcacattctcaaagcgaagacaaggtctattcaaaaaagcaagtgaactttg |
13539498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 45394378 - 45394240
Alignment:
| Q |
29 |
aagattgagatcaaaaagcttgaaaaagaaaccaacaaacaagtcactttctcaaaaagaagacaaggtttattccgaaaagcgagtgaactttgcactt |
128 |
Q |
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|||||||||||||| ||| |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||| | |
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| T |
45394378 |
aagattgagatcaagaaggttgagaaagattccaacaaacttgtcactttctcaaaaagaagacaaggtttattcagaaaagcaagcgaactttgtgtct |
45394279 |
T |
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| Q |
129 |
tatgtgatgttcatgcagccatcatcgtgttttctcctg |
167 |
Q |
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| T |
45394278 |
tatgtgatgttcatgcagccatcattgtgttttcccctg |
45394240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 9668568 - 9668474
Alignment:
| Q |
29 |
aagattgagatcaaaaagcttgaaaaagaaaccaacaaacaagtcactttctcaaaaagaagacaaggtttattccgaaaagcgagtgaactttg |
123 |
Q |
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||||| |||||||| ||| |||| |||| | | |||| ||||||||| |||||||| ||||||||||| ||||| |||||| ||||||||||| |
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| T |
9668568 |
aagatcgagatcaagaagattgacaaagcatcgaacagacaagtcacattctcaaagcgaagacaaggtctattcaaaaaagcaagtgaactttg |
9668474 |
T |
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