View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12508_high_3 (Length: 397)

Name: NF12508_high_3
Description: NF12508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12508_high_3
NF12508_high_3
[»] chr4 (5 HSPs)
chr4 (19-292)||(4644641-4644914)
chr4 (289-387)||(4644438-4644536)
chr4 (21-122)||(42459080-42459181)
chr4 (219-282)||(4636615-4636678)
chr4 (21-122)||(901653-901754)
[»] scaffold0481 (1 HSPs)
scaffold0481 (21-149)||(10639-10767)
[»] chr2 (3 HSPs)
chr2 (21-141)||(32467149-32467269)
chr2 (22-96)||(15343054-15343128)
chr2 (25-74)||(21639274-21639323)
[»] chr8 (3 HSPs)
chr8 (21-113)||(14090346-14090438)
chr8 (21-122)||(8269169-8269269)
chr8 (206-288)||(1798146-1798228)
[»] chr3 (1 HSPs)
chr3 (22-150)||(27991586-27991714)
[»] chr5 (1 HSPs)
chr5 (21-122)||(17221686-17221787)
[»] chr7 (2 HSPs)
chr7 (21-122)||(28244472-28244573)
chr7 (23-75)||(20216333-20216385)
[»] chr6 (1 HSPs)
chr6 (21-67)||(25062463-25062509)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 4644914 - 4644641
Alignment:
Q  19 atagtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgcttttatcccacgagagtatgacatgggacgaggcggtggagatga 118  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4644914 atagtgacacttgatgatgtgtcgtgtttgctgcatctccccattgatggtatgcttttatcccacgagagtatgacatgggacgaggcggtggagatga 4644815  T
Q  119 tgattcatcatttaggggctgatccgggagatgatgatcaaatccattttttcattaacaccgtgcacttcacggtggtttacatagtaatctcagcact 218  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4644814 tgattcaacatttaggggctgatccgggagatgatgatcaaatccattttttctttaacaccgtgcacttcacggtggtttacatagtaatctcagcact 4644715  T
Q  219 aacaattcttcaagtttttccattcaaaaatcaaatcaacaatggaactgatatcaacatatatattagattag 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4644714 aacaattcttcaagtttttccattcaaaaatcaaatcaacaatggaactgatatcaacatatatattagattag 4644641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 289 - 387
Target Start/End: Complemental strand, 4644536 - 4644438
Alignment:
Q  289 ttagttctctttctttgtatacataacctgcaaactcgtgagttttaattgaagagatgtggcatatgtctctacatcatttaactcattgattctgtg 387  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  4644536 ttagttctctttctttgtttacataacctgcaaactcgtgagttttaattgaagagatgtgggatatgtctctacatcatttaactcattgattgtgtg 4644438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 42459181 - 42459080
Alignment:
Q  21 agtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgcttttatcccacgagagtatgacatgggacgaggcggtggagatgatg 120  Q
    |||||||||||||| |||||| |||||| ||| |||| |||||||||| |||||||| |||||| |||||||  || |||||||  ||||||||||||||    
T  42459181 agtgacacttgatgatgtgtcatgtttgatgcgtctccccattgatggcatgcttttttcccacaagagtatttcaagggacgatacggtggagatgatg 42459082  T
Q  121 at 122  Q
    ||    
T  42459081 at 42459080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 4636678 - 4636615
Alignment:
Q  219 aacaattcttcaagtttttccattcaaaaatcaaatcaacaatggaactgatatcaacatatat 282  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |||||    
T  4636678 aacaattcttcaactttttccattccaaaatcaaatcaacaatggaaatgatatcaacttatat 4636615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 901653 - 901754
Alignment:
Q  21 agtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgcttttatcccacgagagtatgacatgggacgaggcggtggagatgatg 120  Q
    |||||||||||||| |||||| ||||||||||| ||| |||||||  | | |||| |  |||||||||||||  || |||||||  | ||||||||| ||    
T  901653 agtgacacttgatgatgtgtcatgtttgctgcacctccccattgactgcaagcttctgccccacgagagtatttcaagggacgatacagtggagatggtg 901752  T
Q  121 at 122  Q
    ||    
T  901753 at 901754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 10639 - 10767
Alignment:
Q  21 agtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgcttttatcccacgagagtatgacatgggacgaggcggtggagatgatg 120  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||  ||  |||||  | || ||||||    
T  10639 agtgacacttgatgatgtgtcatgtttgctgcatctccccattgatggtatgcttttgtcccacgagagaatgacaaaggtggaggctatcgatatgatg 10738  T
Q  121 attcatcatttaggggctgatccgggaga 149  Q
    ||||| |||||| ||||||||||||||||    
T  10739 attcaacatttatgggctgatccgggaga 10767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 32467269 - 32467149
Alignment:
Q  21 agtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgcttttatcccacgagagtatgacatgggacgaggcggtggagatgatg 120  Q
    |||||||||||||| |||||| ||||||||||||||| || |||||||||||||||| | |||||| |||||||||  || ||||| ||| ||||| |||    
T  32467269 agtgacacttgatgatgtgtcatgtttgctgcatctcccccttgatggtatgcttttgttccacgaaagtatgacaaaggtcgaggtggtagagataatg 32467170  T
Q  121 attcatcatttaggggctgat 141  Q
    ||||| |||||||||| ||||    
T  32467169 attcaacatttaggggatgat 32467149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 15343054 - 15343128
Alignment:
Q  22 gtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgcttttatcccacgagagtatgaca 96  Q
    |||| ||| |||| |||||| ||||||||||||||| ||||| ||||| || |||| || || ||||||||||||    
T  15343054 gtgatactcgatgatgtgtcatgtttgctgcatctccccattaatggtttgtttttgtcacatgagagtatgaca 15343128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 21639274 - 21639323
Alignment:
Q  25 acacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgct 74  Q
    |||||||||| |||| | ||||||||||||||||||||||| || |||||    
T  21639274 acacttgatgatgtggcctgtttgctgcatctctccattgacggcatgct 21639323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 14090438 - 14090346
Alignment:
Q  21 agtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgcttttatcccacgagagtatgacatgggacgaggcggtgga 113  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||||| |||||| | |||||||||| ||| ||||||||||| ||||||||    
T  14090438 agtgacacttgatgatgtgtcatgtttgctgcatctccccattgatggcatgcttctctcccacgagactatcacatgggacgacgcggtgga 14090346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 8269169 - 8269269
Alignment:
Q  21 agtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgcttttatcccacgagagtatgacatgggacgaggcggtggagatgatg 120  Q
    |||||||||| ||| |||| | |||||||| |||||  |||||||||||||| |||| || |||||||||||| || ||||| | |||||||||||||||    
T  8269169 agtgacacttaatgatgtg-catgtttgctccatcttaccattgatggtatgtttttgtcacacgagagtatggcaagggacaatgcggtggagatgatg 8269267  T
Q  121 at 122  Q
    ||    
T  8269268 at 8269269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 1798228 - 1798146
Alignment:
Q  206 taatctcagcactaacaattcttcaagtttttccattcaaaaatcaaatcaacaatggaactgatatcaacatatatattaga 288  Q
    ||||||||||||| | |||||||||| |||   |||||||| ||||||||||| |||||| |||||||||  |||||||||||    
T  1798228 taatctcagcactcataattcttcaactttcctcattcaaatatcaaatcaaccatggaattgatatcaaattatatattaga 1798146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 27991714 - 27991586
Alignment:
Q  22 gtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgcttttatcccacgagagtatgacatgggacgaggcggtggagatgatga 121  Q
    ||||||||||||| |||||| ||||||||| ||||| |||||||||| ||| | || ||||||||| |||||||| ||||||| |  || ||||||||||    
T  27991714 gtgacacttgatgatgtgtcatgtttgctggatctccccattgatggcatgttgttgtcccacgagggtatgacaagggacgatgttgtagagatgatga 27991615  T
Q  122 ttcatcatttaggggctgatccgggagat 150  Q
    || | |||||||||| ||||| |||||||    
T  27991614 ttgagcatttaggggttgatcagggagat 27991586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 17221787 - 17221686
Alignment:
Q  21 agtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgcttttatcccacgagagtatgacatgggacgaggcggtggagatgatg 120  Q
    |||||||||||||| |||||| ||||||||||||||| | |||||||| ||| |||| ||||||||||||||  || ||||||| ||||||||| |||||    
T  17221787 agtgacacttgatgatgtgtcctgtttgctgcatctccctattgatggcatgattttgtcccacgagagtatttcaagggacgatgcggtggagttgatg 17221688  T
Q  121 at 122  Q
    ||    
T  17221687 at 17221686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 28244472 - 28244573
Alignment:
Q  21 agtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgcttttatcccacgagagtatgacatgggacgaggcggtggagatgatg 120  Q
    |||||||||||||| |||||| |||||| ||||| || |||||||||| |||||  | ||||||||||||||  || | ||||| |||||||||||||||    
T  28244472 agtgacacttgatgatgtgtcatgtttgttgcatatccccattgatggcatgctcctgtcccacgagagtatttcaagagacgatgcggtggagatgatg 28244571  T
Q  121 at 122  Q
    ||    
T  28244572 at 28244573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 20216385 - 20216333
Alignment:
Q  23 tgacacttgatgttgtgtcgtgtttgctgcatctctccattgatggtatgctt 75  Q
    |||||||||||| |||||| |||||||| |||||| |||||||||| ||||||    
T  20216385 tgacacttgatgatgtgtcttgtttgcttcatctccccattgatggcatgctt 20216333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 25062509 - 25062463
Alignment:
Q  21 agtgacacttgatgttgtgtcgtgtttgctgcatctctccattgatg 67  Q
    |||||||||||||| |||||| |||||||| ||||||||||||||||    
T  25062509 agtgacacttgatgatgtgtcatgtttgcttcatctctccattgatg 25062463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University