View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12508_high_4 (Length: 311)
Name: NF12508_high_4
Description: NF12508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12508_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 140 - 295
Target Start/End: Original strand, 33829632 - 33829787
Alignment:
| Q |
140 |
gttactcaacttagcctataagtacatgtttgtattcatttgatacatctaagtatcttgtattataatcaataacaattttacaatttttaccataaac |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33829632 |
gttactcaacttagcctataagtacatgtttgtattcatttgatacatctaagtatcttgtatcataatcaataacaattttacaattttcaccataaac |
33829731 |
T |
|
| Q |
240 |
aaaactctcttcatcctctctattctcatcacagttcagaacattttgaactctct |
295 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
33829732 |
aaaactctcttcatcctctctattctcattacagttcagaacgttttgaactctct |
33829787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 33829540 - 33829581
Alignment:
| Q |
96 |
caccattgttgatttttatttgttgtggataaatccaactat |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33829540 |
caccattgttgatttttatttgttgtggataaatccaactat |
33829581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 33829463 - 33829501
Alignment:
| Q |
18 |
ctatcaatgaatttgaccctttcccaattcaaacttctc |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33829463 |
ctatcaatgaatttgaccctttcccaattcaagcttctc |
33829501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 45809790 - 45809719
Alignment:
| Q |
140 |
gttactcaacttagcctataagtacatgttt-gtattcatttgatacatctaagtatcttgtattataatcaata |
213 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||| |||||||| | ||||||||||||| |||||||||| |
|
|
| T |
45809790 |
gttactcaacttagcctt---gtacatgttttgtattcagttgatacaaccaagtatcttgtatcataatcaata |
45809719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 41534633 - 41534683
Alignment:
| Q |
245 |
tctcttcatcctctctattctcatcacagttcagaacattttgaactctct |
295 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| || |||| ||||| |
|
|
| T |
41534633 |
tctcttcatcctctctattctcataacagtttagaacgttctgaaatctct |
41534683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 22054845 - 22054909
Alignment:
| Q |
231 |
accataaacaaaactctcttcatcctctctattctcatcacagttcagaacattttgaactctct |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||| || |||| || |||||||||| |
|
|
| T |
22054845 |
accataaacaaaactctcttcatcctctctattcttaacacagatctgaacgttctgaactctct |
22054909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 272
Target Start/End: Complemental strand, 4810026 - 4809902
Alignment:
| Q |
148 |
acttagcctataagtacatgtttgtattcatttgatacatctaagtatcttgtattataatcaataa-caat-tttacaatttttaccataaacaaaact |
245 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| || || |||||||||| | ||||||| ||| |||| ||||| || ||||||||||||||| |
|
|
| T |
4810026 |
acttagcctataagtacttgtttgtattcagttgatgcaacttagtatcttgtgtcataatcactaagcaatacatacaa--ttcaccataaacaaaact |
4809929 |
T |
|
| Q |
246 |
ctcttcatcctctctattctcatcaca |
272 |
Q |
| |
|
|| || |||||| ||||||||||||| |
|
|
| T |
4809928 |
atcctcttcctctatattctcatcaca |
4809902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 930029 - 930066
Alignment:
| Q |
231 |
accataaacaaaactctcttcatcctctctattctcat |
268 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
930029 |
accataaacaaaactctcttcatcttctctattctcat |
930066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 7493658 - 7493728
Alignment:
| Q |
140 |
gttactcaacttagcctataagtacatgttt-gtattcatttgatacatctaagtatcttgtattataatcaata |
213 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||| |||||||| | ||||||||||||| |||||||||| |
|
|
| T |
7493658 |
gttactcaacttagcct----gtacatgttttgtattcagttgatacaaccaagtatcttgtatgataatcaata |
7493728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 175
Target Start/End: Original strand, 3585485 - 3585520
Alignment:
| Q |
140 |
gttactcaacttagcctataagtacatgtttgtatt |
175 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3585485 |
gttactcaacttagcctatacgtacatgtttgtatt |
3585520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 4659771 - 4659831
Alignment:
| Q |
231 |
accataaacaaaactctcttcatcctctctattctcatcacagttcagaacattttgaact |
291 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
4659771 |
accataaacaaaactctattcatcctcattattctcatcacataacagaacatttggaact |
4659831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 14196791 - 14196827
Alignment:
| Q |
140 |
gttactcaacttagcctataagtacatgtttgtattc |
176 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
14196791 |
gttattcaacttatcctataagtacatgtttgtattc |
14196827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University