View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12508_high_6 (Length: 291)
Name: NF12508_high_6
Description: NF12508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12508_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 1561831 - 1562110
Alignment:
| Q |
16 |
aaacttttctatataggttataagtagttttcataagctattccaaaaagggttatgaaaatcaactaaaaatactttatgaacatgtcgtaaaatgttc |
115 |
Q |
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| T |
1561831 |
aaacttttctatatagattataagtagttttcataagctattccaaaaagggttatgaaaaccaactaaaaatactttatgaacatgtcataaaatgttc |
1561930 |
T |
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| Q |
116 |
tataagcacnnnnnnnngggtacaaattccataagctcttctaaattctctcccgtgtttatattaatagataaactcaaataaattaattcaaacaagt |
215 |
Q |
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| T |
1561931 |
tataagcacttttttttgggtacaaattccataagctcttttaaattctctcatgtgtttatattaatagataaactcaaataaattaatccaaacaaat |
1562030 |
T |
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| Q |
216 |
tcttaatttcaaccaaaaaagagggtat--------------acaagctctaaatctttaattccaatttgcctcctatg |
281 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1562031 |
tcttaatttcaaccaaaaaagagggtatactgcaaccaaaaaacaagctctaaatctttaattccaatttgcctcctatg |
1562110 |
T |
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