View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12508_high_8 (Length: 268)
Name: NF12508_high_8
Description: NF12508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12508_high_8 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: scaffold0071 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 7455 - 7280
Alignment:
| Q |
1 |
tggaagtgtttgcctaccagccgatcgtgtatcataataataataaagtctgtcaccgtaatttaaaataagttcctgattttttccaaaattttgaaag |
100 |
Q |
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| T |
7455 |
tggaagtgtttgcctaccagccgatcgtgtatcataataataataaagtctgtcaccgtaatttaaaataagttcctgcttttttccaaaattttgaaag |
7356 |
T |
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| Q |
101 |
tatggatggatatttatattttgctcatttgtcgttgtcgtattcgattgttttggaattttaaatacctatcatg |
176 |
Q |
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| T |
7355 |
tatggatggatatttatattttgctcatttgtcgttgtcgtattcgattgttttcgaattttaaatacctatcatg |
7280 |
T |
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Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 15454736 - 15454911
Alignment:
| Q |
1 |
tggaagtgtttgcctaccagccgatcgtgtatcataataataataaagtctgtcaccgtaatttaaaataagttcctgattttttccaaaattttgaaag |
100 |
Q |
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| T |
15454736 |
tggaagtgtttgcctaccagccgatcgtgtatcataataataataaagtctgtcaccgtaatttaaaataagttcctgcttttttccaaaattttgaaag |
15454835 |
T |
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| Q |
101 |
tatggatggatatttatattttgctcatttgtcgttgtcgtattcgattgttttggaattttaaatacctatcatg |
176 |
Q |
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| T |
15454836 |
tatggatggatatttatattttgctcatttgtcgttgtcgtattcgattgttttcgaattttaaatacctatcatg |
15454911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 8158912 - 8159045
Alignment:
| Q |
7 |
tgtttgcctaccagccgatcgtgtatcataataataataaagtctgtcaccgtaatttaaaataagttcctgattttttccaaaattttgaaagtatgga |
106 |
Q |
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||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||| | || |||||| |
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| T |
8158912 |
tgtttgcctaccagcggactgtgcatcataataataataaagtttgtcaccgtaatttataataagttcctgcttttttctgaaattct-taactatgga |
8159010 |
T |
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| Q |
107 |
tggatatttatattttgctcatttgtcgttgtcgt |
141 |
Q |
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|||| |||| |||||||||||||| |||||||||| |
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| T |
8159011 |
tggaaatttctattttgctcatttatcgttgtcgt |
8159045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 39198082 - 39198020
Alignment:
| Q |
101 |
tatggatggatatttatattttgctcatttgtcgttgtcgtattcgattgttttggaatttta |
163 |
Q |
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||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
39198082 |
tatggatggatatttctattttgctcatttgttaccatcgtatttaattgttttggaatttta |
39198020 |
T |
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