View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12508_low_1 (Length: 441)
Name: NF12508_low_1
Description: NF12508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12508_low_1 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: scaffold0071 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 71 - 423
Target Start/End: Complemental strand, 7164 - 6812
Alignment:
| Q |
71 |
tcttataattgaaatgtatgaatctaaatttcaggttcaaggttaaaaaatgtattgttctttttcgtagaaatatccgtaacgtaagggtctgaactga |
170 |
Q |
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| T |
7164 |
tcttataattgaaatgtatgaatctaaatttcaggttcaaggttaaaaaatgtattgttctttttcgtagaaatatccgtaacgtaagggtctgaactga |
7065 |
T |
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| Q |
171 |
gttatgtggtttatcacaaaaataccaaacttttgttcatgcctccatatggactgaaaacttaagaaaaccaccactgtaatttctatttactgtattt |
270 |
Q |
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| T |
7064 |
gttatgtggtttatcacaaaaataccaaacttttgttcatgcctccatatggactgaaaacttaagaaaaccaccactggaatttctatttactgtattt |
6965 |
T |
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| Q |
271 |
taaaccttatgtaaattcaaatgagatgctttagaagcagctaaattttttgtttgcaagttacaccaaaaatttacaagaagttgcttacattcatgtc |
370 |
Q |
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| T |
6964 |
taaaccttatgtgaattcaaatgagatgctttagtagcagctaaattttttgtttgcaagttacaccaaaaatttacaagaagttgcttacattcatgtc |
6865 |
T |
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| Q |
371 |
atagtaataacggtgttcaatatattttgttaatgattgttatacaccataat |
423 |
Q |
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| T |
6864 |
atagtaataacagtgttcaatatattttgttaatgattgttatacgccataat |
6812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 71 - 423
Target Start/End: Original strand, 15455027 - 15455379
Alignment:
| Q |
71 |
tcttataattgaaatgtatgaatctaaatttcaggttcaaggttaaaaaatgtattgttctttttcgtagaaatatccgtaacgtaagggtctgaactga |
170 |
Q |
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| T |
15455027 |
tcttataattgaaatgtatgaatctaaatttcaggttcaaggttaaaaaatgtattgttctttttcgtagaaatatccgtaacgtaagggtctgaactga |
15455126 |
T |
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| Q |
171 |
gttatgtggtttatcacaaaaataccaaacttttgttcatgcctccatatggactgaaaacttaagaaaaccaccactgtaatttctatttactgtattt |
270 |
Q |
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| T |
15455127 |
gttatgtggtttatcacaaaaataccaaacttttgttcatgcctccatatggactgaaaacttaagaaaaccaccactggaatttctatttactgtattt |
15455226 |
T |
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| Q |
271 |
taaaccttatgtaaattcaaatgagatgctttagaagcagctaaattttttgtttgcaagttacaccaaaaatttacaagaagttgcttacattcatgtc |
370 |
Q |
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| T |
15455227 |
taaaccttatgtgaattcaaatgagatgctttagtagcagctaaattttttgtttgcaagttacaccaaaaatttacaagaagttgcttacattcatgtc |
15455326 |
T |
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| Q |
371 |
atagtaataacggtgttcaatatattttgttaatgattgttatacaccataat |
423 |
Q |
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| T |
15455327 |
atagtaataacagtgttcaatatattttgttaatgattgttatacgccataat |
15455379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 421
Target Start/End: Original strand, 8159309 - 8159633
Alignment:
| Q |
97 |
aatttcaggttcaaggttaaaaaatgtattgttctttttcgtagaaatatccgtaacgtaagggtctgaactgagttatgtggtttatcacaaaaatacc |
196 |
Q |
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|||||||| ||||||||||||||||| |||| |||||| |||||| ||||| |||||||||||| ||||| || || |||| ||| | || || ||| |
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| T |
8159309 |
aatttcagattcaaggttaaaaaatggattgatcttttatgtagaagtatccctaacgtaagggtatgaacggaattttgtgacttaccgcataactaca |
8159408 |
T |
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| Q |
197 |
aaacttttgttcatgcctccatatggactgaaaacttaagaaaaccaccactgtaatttctatttactgtattttaaaccttatgtaaattcaaatgaga |
296 |
Q |
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| T |
8159409 |
aaaattaagtaaatgcttccatatgcactgaatatttacgaaaagcatcattggtagttattgttgcggtgttacaaactttctgtaaattcaaatgata |
8159508 |
T |
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| Q |
297 |
tgctttagaagcagctaaattttttgtttgcaagttacaccaaaaatttacaagaagttgcttacattcatgtcatagtaataacggtgttcaatatatt |
396 |
Q |
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| T |
8159509 |
tgcttcagtagtagctaaatttttaatttgcaagttaaagcaaaatttaacgcaaatttgcttactttcacgtcaccgtaataacagagttcaatatatt |
8159608 |
T |
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| Q |
397 |
ttgttaatgattgttatacaccata |
421 |
Q |
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| T |
8159609 |
ttgttagtgactgttatacgccata |
8159633 |
T |
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