View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12508_low_10 (Length: 243)
Name: NF12508_low_10
Description: NF12508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12508_low_10 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 22655 - 22422
Alignment:
| Q |
1 |
tttgaacttctttcatgaaccttccggcaagattttcaaggacaattccgtctgaggcggcgaagaaggcgagaacgtgagagacgaagtggcgttcacc |
100 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| || |
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| T |
22655 |
tttggacttctttcatgaatcttccggcaagattttcaaggacaattccgtctgaggcggcgaagaaggcaagaacgtgagagatgaagtggcgttcgcc |
22556 |
T |
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| Q |
101 |
gtcagtgaggttgttccagttcttgagatcggaggaaagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagattttt |
200 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22555 |
gtctgtgaggttgttccagtgcttgagatcggaggaaagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagattttt |
22456 |
T |
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| Q |
201 |
gggtattggattgggaacatgcagaatcggtctg |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
22455 |
gggtattggattgggaacatgcagaatcggtctg |
22422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 10197433 - 10197666
Alignment:
| Q |
1 |
tttgaacttctttcatgaaccttccggcaagattttcaaggacaattccgtctgaggcggcgaagaaggcgagaacgtgagagacgaagtggcgttcacc |
100 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| || |
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| T |
10197433 |
tttggacttctttcatgaatcttccggcaagattttcaaggacaattccgtctgaggcggcgaagaaggcaagaacgtgagagatgaagtggcgttcgcc |
10197532 |
T |
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| Q |
101 |
gtcagtgaggttgttccagttcttgagatcggaggaaagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagattttt |
200 |
Q |
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| T |
10197533 |
gtctgtgaggttgttccagtgcttgagatcggaggaaagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagattttt |
10197632 |
T |
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| Q |
201 |
gggtattggattgggaacatgcagaatcggtctg |
234 |
Q |
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| T |
10197633 |
gggtattggattgggaacatgcagaatcggtctg |
10197666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 25025925 - 25026158
Alignment:
| Q |
1 |
tttgaacttctttcatgaaccttccggcaagattttcaaggacaattccgtctgaggcggcgaagaaggcgagaacgtgagagacgaagtggcgttcacc |
100 |
Q |
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||||||||||||||||||| |||||||| |||||||| ||||| || ||||| |||||||||||||||||||| | |||||||| |||||||||||| || |
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| T |
25025925 |
tttgaacttctttcatgaatcttccggcgagattttcgaggacgataccgtcggaggcggcgaagaaggcgaggatgtgagagatgaagtggcgttcgcc |
25026024 |
T |
|
| Q |
101 |
gtcagtgaggttgttccagttcttgagatcggaggaaagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagattttt |
200 |
Q |
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||| |||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25026025 |
gtcggtgaggttgttccagtgttgaagatcggaggaaagatcgacttcttcggcggtccagaaagaggcttcggcttttttgtacatttcccagattttt |
25026124 |
T |
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| Q |
201 |
gggtattggattgggaacatgcagaatcggtctg |
234 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
25026125 |
gggtattggattgggaacatacagaatcggtctg |
25026158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 19457159 - 19456933
Alignment:
| Q |
8 |
ttctttcatgaaccttccggcaagattttcaaggacaattccgtctgaggcggcgaagaaggcgagaacgtgagagacgaagtggcgttcaccgtcagtg |
107 |
Q |
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||||||||| || || ||||| |||||||||||||| || ||||| ||||| |||||||||||||| || ||||||| |||||||||||| ||||| ||| |
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| T |
19457159 |
ttctttcataaatctaccggcgagattttcaaggacgatgccgtcggaggcagcgaagaaggcgaggacatgagagatgaagtggcgttcgccgtcggtg |
19457060 |
T |
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| Q |
108 |
aggttgttccagttcttgagatcggaggaaagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtatt |
207 |
Q |
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||||| | ||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19457059 |
aggttttgccagtgcttgagatcggaggaaagatcgacttcttcagcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtatt |
19456960 |
T |
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| Q |
208 |
ggattgggaacatgcagaatcggtctg |
234 |
Q |
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||||||||||||||||||||||||||| |
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| T |
19456959 |
ggattgggaacatgcagaatcggtctg |
19456933 |
T |
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