View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12508_low_4 (Length: 374)
Name: NF12508_low_4
Description: NF12508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12508_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 25574493 - 25574836
Alignment:
| Q |
18 |
agtactgacacctctgatcaaagacgtgtctgagtctgacattgacatgacaccaatacatacatgtgattacgttcaaataatttatttannnnnnnaa |
117 |
Q |
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| T |
25574493 |
agtactaacacctctgatcaaagacgtgtctgagtctgacattgacatgacaccgatacatacatgtgattacgttcaaataatttatttatttttttaa |
25574592 |
T |
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| Q |
118 |
attattattcatgtcgatttgtgagctgtgtctctgtcggtgcttcataatttacttgcttggaatggaattcaatannnnnnn-cttactattaaatgt |
216 |
Q |
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| T |
25574593 |
attattattcatgtcgatttgtgagctgtgtctgtgttggtgcttcataatttacttgcttggaatggaattcaatattttttttcttactattaaatgt |
25574692 |
T |
|
| Q |
217 |
gtttgtttattattgtagatgtcgttgtatttcggtaaactatcggaacgtgtttgtagagatgaacttgagcgagtttttggtagatttgggcattgta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25574693 |
gtttgtttattattgtagatgtcgttgtatttcggtaaactatcggaacgtgtttgtagagatgaacttgagcgagtttttggtagatttgggcgttgta |
25574792 |
T |
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| Q |
317 |
atgttcaggtgaaaaaagaaggttatggttttgtggtgtttgat |
360 |
Q |
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| T |
25574793 |
atgttcaggtgaaaaaagaaggttatggttttgtggtgtttgat |
25574836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 9895196 - 9895168
Alignment:
| Q |
79 |
acatgtgattacgttcaaataatttattt |
107 |
Q |
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| T |
9895196 |
acatgtgattacgttcaaataatttattt |
9895168 |
T |
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