View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12509_high_4 (Length: 201)
Name: NF12509_high_4
Description: NF12509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12509_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 3e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 975992 - 975827
Alignment:
| Q |
33 |
tgaatgaatgaatactaattaggaatgtgaatgt---------ggtcttaatgtttgatgaaatgcttcaaatattatttttagattcttctacttgttg |
123 |
Q |
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| T |
975992 |
tgaatgaatgaatactaattaggaatgtgaatgtcatttttgtggtcttaatgtttgatgaaatgcttcaaatattagttttagattcttctacttgttg |
975893 |
T |
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| Q |
124 |
gcattaaaaacattcatcctccacaaataaattgaaagcgacgagaagagttagttacctttgctt |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
975892 |
gcattaaaaacattcatcctccacaaataaattgaaagcgacgagaagagttagctacctttgctt |
975827 |
T |
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