View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12509_low_1 (Length: 523)
Name: NF12509_low_1
Description: NF12509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12509_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 20 - 500
Target Start/End: Original strand, 12486302 - 12486781
Alignment:
| Q |
20 |
gttcaagcatagaattcgacgcaaacactttgataagcatatcaaacacaacattagacttttccacatcaagcagaagcgaaaccaattcaccggcgtc |
119 |
Q |
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| T |
12486302 |
gttcaagcatagaattcgacgcaaacactttgataagcatatcaaacacaacattagacttttccacatcaagcagaagcgaaaccaattcaccggcgtc |
12486401 |
T |
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| Q |
120 |
acgattctcttccttataaaatgtaacaatatctctaatcaaaataaaaacttcccaagacataccagctaaagcataagtgtgaataatgatactaaag |
219 |
Q |
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| T |
12486402 |
gcgattctcttccttataaaatgtaacaatatctctaatcaaaataaaaacttcccaagacataccagctaaagcataagtgtgaatgatgatactaaag |
12486501 |
T |
|
| Q |
220 |
gaattgattgaattttcaaaaccatgaatttgaacacagcccttgaatttgatttctcttgcaacaccccaatttaaggttttgaagactttggaaacta |
319 |
Q |
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| T |
12486502 |
gaattgattgaattttcaaaaccatgaatttgaacacagcccttgaatttgatttctcttgcaacaccccaatttaaggttttgaagactttggaaacta |
12486601 |
T |
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| Q |
320 |
aacgagggagttttgtggtggttttgggaagtggggtgttgaaaattggagtttcagtttcaggttgtaacattaatgcagaagaagatggtgaatagaa |
419 |
Q |
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| T |
12486602 |
aacgagggagttttgtggtggttttgggaagtggggtgttgaaaattggagtttcagtttcaggttgtaacattaatgcagaagaagatggtgaatagaa |
12486701 |
T |
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| Q |
420 |
cctgaagaaagttgtttggtggaaatgaagtcttctgcggagtaagcatttcaccgccattaacgtttacaggttaatcat |
500 |
Q |
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| T |
12486702 |
cctgaagaaagttgtttggtggaaatgaagtcttctgcggagtaagcatttcaccgccattaa-gtttacaggttaatcat |
12486781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 144 - 360
Target Start/End: Original strand, 32992767 - 32992982
Alignment:
| Q |
144 |
aacaatatctctaatcaaaataaaaacttcccaagacataccagctaaagcataagtgtgaataatgatactaaaggaattgattgaattttcaaaacca |
243 |
Q |
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|||||| ||||||| ||||||||| ||||| ||| | || ||| ||||||||||||||||| |||||| ||||| ||||||||||| ||||||| |
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| T |
32992767 |
aacaatttctctaagcaaaataaagacttctaaaggcgtagaagcgaaagcataagtgtgaatgatgatagtaaagaaattgattgaagaga-aaaacca |
32992865 |
T |
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| Q |
244 |
tgaatttgaacacagcccttgaatttgatttctcttgcaacaccccaatttaaggttttgaagactttggaaactaaacgagggagttttgtggtggttt |
343 |
Q |
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||| ||||||| || |||||||| |||||||| |||||||||||||||||||||| ||||||||||| | ||||||| |||| |||||||| ||||||| |
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| T |
32992866 |
tgagtttgaacccaacccttgaacttgatttcccttgcaacaccccaatttaaggacttgaagactttagcaactaaatgaggcagttttgttgtggttt |
32992965 |
T |
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| Q |
344 |
tgggaagtggggtgttg |
360 |
Q |
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| T |
32992966 |
tgtgacgtggggtgttg |
32992982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 32992643 - 32992693
Alignment:
| Q |
20 |
gttcaagcatagaattcgacgcaaacactttgataagcatatcaaacacaa |
70 |
Q |
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|||||||||||||||| || ||||| ||||||||||||||||||||||||| |
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| T |
32992643 |
gttcaagcatagaatttgaagcaaaaactttgataagcatatcaaacacaa |
32992693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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