View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12509_low_6 (Length: 371)
Name: NF12509_low_6
Description: NF12509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12509_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 12171410 - 12171101
Alignment:
| Q |
5 |
aatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttccttgtcctcggtaactacag |
102 |
Q |
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| T |
12171410 |
aatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttccttgtcctcagcaactacag |
12171311 |
T |
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| Q |
103 |
ttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttccgacaaagaaaatgagaa |
202 |
Q |
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| T |
12171310 |
ttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattccgacaaagaaaatgagaa |
12171211 |
T |
|
| Q |
203 |
gaatacagtctccacacaatcacatgacaatattaattta-tatacactc--ttttcagagaaatttttaactttgaactaagaaaagtaacaagattca |
299 |
Q |
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| T |
12171210 |
aattccagtctcca---aat-acattac-attttaagttattatacactcaattttcagacaaatttttaactttgaaccaagaaaagtagc-agattca |
12171117 |
T |
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| Q |
300 |
cttagactgagctgga |
315 |
Q |
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||||| |||||||||| |
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| T |
12171116 |
cttagcctgagctgga |
12171101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 12415838 - 12415529
Alignment:
| Q |
5 |
aatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttccttgtcctcggtaactacag |
102 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| | |||||||| |
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| T |
12415838 |
aatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttccttgtcctcagcaactacag |
12415739 |
T |
|
| Q |
103 |
ttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttccgacaaagaaaatgagaa |
202 |
Q |
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||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12415738 |
ttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattccgacaaagaaaatgagaa |
12415639 |
T |
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| Q |
203 |
gaatacagtctccacacaatcacatgacaatattaattta-tatacactc--ttttcagagaaatttttaactttgaactaagaaaagtaacaagattca |
299 |
Q |
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| | ||||||||| ||| |||| || || |||| ||| ||||||||| |||||||| |||||||||||||||||| |||||||||| | ||||||| |
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| T |
12415638 |
aattccagtctcca---aat-acattac-attttaagttattatacactcaattttcagacaaatttttaactttgaaccaagaaaagtagc-agattca |
12415545 |
T |
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| Q |
300 |
cttagactgagctgga |
315 |
Q |
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||||| |||||||||| |
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| T |
12415544 |
cttagcctgagctgga |
12415529 |
T |
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