View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12509_low_7 (Length: 303)
Name: NF12509_low_7
Description: NF12509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12509_low_7 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 40908848 - 40908556
Alignment:
| Q |
10 |
ttatgctaaaaatacttgatagtatatacaaatactacgcccaagtcccttgagccctattgagagtggtagcatgttgttagccataggaaagatctag |
109 |
Q |
| |
|
||||||| |||||||||||||| |||| |||||| |||| ||||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
40908848 |
ttatgctcaaaatacttgatagaatatccaaatattacgaccaagtcccccgagccctattgagtgtggtcgcatgctgttagccataggaaagatctat |
40908749 |
T |
|
| Q |
110 |
ctagacagaattcatcatgaatcatttgtagtttgttagagtgtgctaaataaactaatttatgttatgtttggcctggcataagcatgagccatcttct |
209 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
40908748 |
caagacagaattcatcatgaatcatttgtagtttgttagtgtgcgctaaataaactaatttatgttatgtttagcctggcctaagcatgagccatcttct |
40908649 |
T |
|
| Q |
210 |
ttcttttgctacttcttcataattttgtaaatttcttacagtttggctctatatttcaatctgctgttgtttgatattacattacaacctttat |
303 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| || ||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
40908648 |
ttcttttgctgctt-ttcataattttgtaaatttcttacaattaggctctatatttcaacctgcagttgtttgatattacattacaacctttat |
40908556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 40901364 - 40901324
Alignment:
| Q |
227 |
cataattttgtaaatttcttacagtttggctctatatttca |
267 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| |||||| |
|
|
| T |
40901364 |
cataattttgtaaactccttacagtttggctctagatttca |
40901324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University