View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_high_106 (Length: 209)
Name: NF1250_high_106
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_high_106 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 54158357 - 54158188
Alignment:
| Q |
40 |
attgcaggtctgatgagtcctcatggagggcatcatctaaacttgtcgcagaaattgctggtcatggagaagattctggctttgaggtgccttgccttat |
139 |
Q |
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| T |
54158357 |
attgtaggtctgatgagtcctcatggagggcatcatctaaacttcttgtagatattgctgctcatggagaagattctggctttgaggtgccttgccttat |
54158258 |
T |
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| Q |
140 |
agttgctgctaaagatgaccaggtttcatttaaaatggctgcacaagaatctactaggggaattttcatt |
209 |
Q |
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| T |
54158257 |
agttgctgctaaagatgaccaggtttcatttacaatggctgcacaagagtctactagggtaattttcatt |
54158188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 51365639 - 51365486
Alignment:
| Q |
45 |
aggtctgatgagtcctcatggagggcatcatctaaacttgtcgcagaaattgctggtcatggagaagattctggctttgaggtgccttgccttatagttg |
144 |
Q |
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| T |
51365639 |
aggtctaatgagtcctcatggaaggcatcgtctaaactccttgtagaaattgctcgtcatggagaacatactggctttaaggtgccctgccttatagttg |
51365540 |
T |
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| Q |
145 |
ctgctaaagatgaccaggtttcatttaaaatggctgcacaagaatctactaggg |
198 |
Q |
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| T |
51365539 |
cagctaaagatgaccagtattcatttccaatggctgtacaagagtcaactaggg |
51365486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 57 - 208
Target Start/End: Original strand, 53868919 - 53869070
Alignment:
| Q |
57 |
tcctcatggagggcatcatctaaacttgtcgcagaaattgctggtcatggagaagattctggctttgaggtgccttgccttatagttgctgctaaagatg |
156 |
Q |
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| T |
53868919 |
tcctcatggaggtcatcatctgaactccttgtagaaattgctcgtcacggagaagataatggctttgaggtgccttgccttatagttgcagctaaagatg |
53869018 |
T |
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| Q |
157 |
accaggtttcatttaaaatggctgcacaagaatctactaggggaattttcat |
208 |
Q |
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| T |
53869019 |
aacaggattcatttccaatggctacacaagagttaactagggtatttttcat |
53869070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 15014732 - 15014644
Alignment:
| Q |
91 |
aaattgctggtcatggagaagattctggctttgaggtgccttgccttatagttgctgctaaagatgaccaggtttcatttaaaatggct |
179 |
Q |
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| T |
15014732 |
aaattgctggtcatggagaagacaccggctttcaggtgccctgtcttacagttgcagttaatgatgatcaggattcatttacaatggct |
15014644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 14773374 - 14773240
Alignment:
| Q |
45 |
aggtctgatgagtcctcatggagggcatcatctaaacttgtcgcagaaattgctggtcatggagaagattctggctttgaggtgccttgccttatagttg |
144 |
Q |
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| T |
14773374 |
aggtctgatgagacttcaaggaaggcatcatctgaactcttgttaaaaattgctcgtcatggagaagacactggttttcaggtaccctgtcttatagttg |
14773275 |
T |
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| Q |
145 |
ctgctaaagatgaccaggtttcatttaaaatggct |
179 |
Q |
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| T |
14773274 |
tagctaaagatgatcaagattcatttacaatggct |
14773240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 36877242 - 36877306
Alignment:
| Q |
93 |
attgctggtcatggagaagattctggctttgaggtgccttgccttatagttgctgctaaagatga |
157 |
Q |
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| T |
36877242 |
attgctggtcatggagaaaatactggctatgaggtgccctgtcttatagttgcagctaaggatga |
36877306 |
T |
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