View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_high_11 (Length: 558)
Name: NF1250_high_11
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 170 - 450
Target Start/End: Complemental strand, 28188602 - 28188343
Alignment:
| Q |
170 |
atttgcatgtggagacaagttatacgtactcataagtcaaaagttgaagcaggccaggccagttgatcaatttctatagtcaaacgattaatttatatca |
269 |
Q |
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| T |
28188602 |
atttgcatgtggagacaagttatacgtactcataagtcaaaagttgaagcaggccaggccagttgatcaatttctatagtcaaacgattaatttatatca |
28188503 |
T |
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| Q |
270 |
attaattatccttactnnnnnnnncataaacaatagtatttgttattggcatcatctcctttagaaaaataaataaataaagagagtgaaagtttaagag |
369 |
Q |
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| T |
28188502 |
attaattatccttactaaaaaaatcataaacaa---tatttgttattggcatcatctcctttagaaaaataaataaataaagagagtgaaagtttaagag |
28188406 |
T |
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| Q |
370 |
gccgtgagatcacataatagtattaccaataatctaaaaattgtattactttagcaatatgagtattaagtattaacaaca |
450 |
Q |
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| T |
28188405 |
gccgtgag------------------caataatctaaaaattgtattactttagcaatatgagtattaagtattaacaaca |
28188343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 428 - 549
Target Start/End: Complemental strand, 28188298 - 28188177
Alignment:
| Q |
428 |
atgagtattaagtattaacaacacacttttaacatataattttcaaaaaattctctctcaaatattataaaatatatggtcgataatgtgtagttagtat |
527 |
Q |
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| T |
28188298 |
atgagtattaagtattaacaacacacttttaacatataattttcaacaaattctctctcaaatattataaaatatatggtggataatgtgtagttagtat |
28188199 |
T |
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| Q |
528 |
ttttcttttacccaagtattat |
549 |
Q |
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| T |
28188198 |
ttttcttttgcccaagtattat |
28188177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 28188719 - 28188631
Alignment:
| Q |
84 |
gtcataattgaattattttgatatttttcataaattttggattatttgtgttcaataaacacgtacatatgcaaaagttacttgttatt |
172 |
Q |
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| T |
28188719 |
gtcataattgaattattttgatatttttcataaattttggattatttgtgttcaataaacacgtacgtatgcaaaagttacttgttatt |
28188631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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