View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1250_high_20 (Length: 444)
Name: NF1250_high_20
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 31 - 406
Target Start/End: Complemental strand, 4191915 - 4191534
Alignment:
| Q |
31 |
gataacggatgaacataaaaagagggatattgaataagttaactgatagcaagagagatcgtagtagatgtcatttctaagattttgatgacatcttgat |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4191915 |
gataacggatgaacataaaaagagggatattgaataagttaactgatagcaagagagatcgtagtagatgtcatttctacgattttgatgacatcttgat |
4191816 |
T |
|
| Q |
131 |
aacaatttttaattcgggtattcagttagcattgttattctaaagaataagatggtctttttaattgcttattgtaaatgttaatgagtgactgttttct |
230 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4191815 |
aacaatgtttaattcggatattcagttagcattgttattctaaagaataagatggtctttttaattgct--ttgtaaatgttaatgagtgactgttttct |
4191718 |
T |
|
| Q |
231 |
atctctagtgataaacctctctaatgtgcttggtgacaaaactcatccgagaggagagaagaaccaaactgctaaatt-----------nnnnnnntgca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4191717 |
ctctctagtgataaacctctctaatgtgcttggtgacaaaactcatccgagaggagagaagaaccaaactgctaaattaaaaaataaaataaaaaatgca |
4191618 |
T |
|
| Q |
320 |
ttatattatgatatgtttttcattttccacactaatcacctctcttttattagcaaaatgataaaactatctttagtgtcccgtatt |
406 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4191617 |
tta---tatgatatgtttttcattttccacactaatcacctctcttttattagcaaaatgacaaaactatctttagtgtcccgtatt |
4191534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University