View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_high_21 (Length: 444)
Name: NF1250_high_21
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_high_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 444
Target Start/End: Complemental strand, 2618080 - 2617646
Alignment:
| Q |
8 |
attattctatatataattggagtatcaatggttgaatgaaattaatgaatgaatttgatagataatctactagtacttgtacaacacaatttgttaaaga |
107 |
Q |
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| T |
2618080 |
attattctatatataattggagtatcaatggttgaatgaaattaatgaatgaatttgatagataatctactagtacttgtacaacacaatttgttaaaga |
2617981 |
T |
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| Q |
108 |
aacgtctaaatttccaatctatgaaaaagtctaaatttctaatattttaatgtcgggctttcgtggggctacattaaaaccataaatagcaaatgaataa |
207 |
Q |
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| T |
2617980 |
aacgtctaaatttccaatctatgaaaaagtctaaatttctaatattttaatgtcgggctttcgtggggctacattaaaaccataaatagcaaatgaat-a |
2617882 |
T |
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| Q |
208 |
aaccattgggtatctatttctacattttgagtaggttaacttgtgttttctattgatcccaatgactaaacaactcatcatcatctacaaataagttagt |
307 |
Q |
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| T |
2617881 |
aaccattgggtatctatttctacattttgagtaggttaacttgtgttttctattgatcccaatgactaaacaactcatcatcatctacaaataagttagt |
2617782 |
T |
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| Q |
308 |
cttcaatttggcnnnnnnnnnnnnnnacttatcttgtcgttaatgactaaatgcaaatataatacaaaattagattacaataaaaattccaattttaagt |
407 |
Q |
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| T |
2617781 |
cttcaatttggc-tttttttttttttacttatcttgtcgttaatgactaaatgcaaatacaatacaaaattagattaccatacaaattcccattttaagt |
2617683 |
T |
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| Q |
408 |
tttggtaatatgtaattagaaataattggtaaatttt |
444 |
Q |
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| T |
2617682 |
tttggtaatatgtaactagaaatactcggtaactttt |
2617646 |
T |
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