View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_high_25 (Length: 427)

Name: NF1250_high_25
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_high_25
NF1250_high_25
[»] chr5 (14 HSPs)
chr5 (30-415)||(13425547-13425932)
chr5 (30-407)||(13418681-13419042)
chr5 (164-405)||(13446263-13446504)
chr5 (166-383)||(13453102-13453319)
chr5 (158-402)||(13412308-13412552)
chr5 (213-390)||(13411596-13411773)
chr5 (166-297)||(13448892-13449025)
chr5 (182-367)||(13372511-13372696)
chr5 (173-382)||(13386045-13386254)
chr5 (177-367)||(13378249-13378439)
chr5 (182-349)||(13389842-13390009)
chr5 (29-85)||(13446533-13446589)
chr5 (210-349)||(13394330-13394469)
chr5 (53-84)||(13412640-13412671)
[»] chr4 (1 HSPs)
chr4 (182-390)||(47600457-47600665)
[»] chr8 (1 HSPs)
chr8 (177-371)||(28431499-28431693)


Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 30 - 415
Target Start/End: Complemental strand, 13425932 - 13425547
Alignment:
Q  30 cttcctgtattttctttacttggaggtaagcatatgaaaaatatttccatatatactcccatagtatagtttaagactaaaatactaaatacgcagtttt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13425932 cttcctgtattttctttacttggaggtaagcatatgaaaaatatttccatatatactcccatagtatagtttaagactaaaatactaaatacgcagtttt 13425833  T
Q  130 aaattcaaattatgcagaatgttgatacttgtattaatttcacattatttgtagggagaaagttagtagctggaagtttgattggagggataaaggagac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13425832 aaattcaaattatgcagaatgttgatacttgtattaatttcacattatttgtagggagaaagttagtagctggaagtttgattggagggataaaggagac 13425733  T
Q  230 tcaagaaatgattgattttgcggcagaacacaatgtaaaacctgatattgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaa 329  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13425732 tcaagaaatgattgattttgcggccgaacacaatgtaacacctgatattgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaa 13425633  T
Q  330 gcagacgtgaaatatcgattcgttattgatattggaaatacactaaaaccaagcccttaaacaatgcaggatatatcttacagaat 415  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  13425632 gcagatgtgaaatatcgattcgttattgatattggaaatacactaaaaccaagcccttaaacattgcaggatatatctcacagaat 13425547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 407
Target Start/End: Complemental strand, 13419042 - 13418681
Alignment:
Q  30 cttcctgtattttctttacttggaggtaagcatatgaaaaatatttccatatatactcccatagtatagtttaagactaaaatactaaatacgcagtttt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||               ||| ||||| |    
T  13419042 cttcctgtattttctttacttggaggtaagcatatgaaaaatatttccatatataatcccatagcatagtttaa---------------tacacagttct 13418958  T
Q  130 aaattcaaattatgcagaatgttgatacttgtattaatttcacattatttgtagggagaaagttagtagctggaagtttgattggagggataaaggagac 229  Q
    |||||||||||||||| ||| || |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13418957 aaattcaaattatgcataatttt-atacctgtattaattgcacattatttgtagggagaaagttagtagctggaagtttgattggagggataaaggagag 13418859  T
Q  230 tcaagaaatgattgattttgcggcagaacacaatgtaaaacctgatattgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaa 329  Q
    |||||||||| |||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13418858 tcaagaaatggttgattttgcagcagaacacaatgtaacgcctgatattgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgataaa 13418759  T
Q  330 gcagacgtgaaatatcgattcgttattgatattggaaatacactaaaaccaagcccttaaacaatgcaggatatatct 407  Q
    ||||| || |||||||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  13418758 gcagatgttaaatatcgattcgtgattgatattggaaatacgctgaaaccaagcccttaaacattgcaggatatatct 13418681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 164 - 405
Target Start/End: Complemental strand, 13446504 - 13446263
Alignment:
Q  164 taatttcacattatttgtagggagaaagttagtagctggaagtttgattggagggataaaggagactcaagaaatgattgattttgcggcagaacacaat 263  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||  ||||||||    
T  13446504 taatttcacattatttgtagggagaaagtcaatagctggaagtttaattggagggataaaagagactcaagaaatgattgattttgctgctaaacacaat 13446405  T
Q  264 gtaaaacctgatattgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaagcagacgtgaaatatcgattcgttattgatattg 363  Q
    ||||  ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |  |||| ||| || |||||||||||||| ||||||||||    
T  13446404 gtaacgcctgagattgaggttgttcctattgattatgtcaacaccgcaatggagcgtcttgttaaaggagatgtcaaatatcgattcgtgattgatattg 13446305  T
Q  364 gaaatacactaaaaccaagcccttaaacaatgcaggatatat 405  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  13446304 gaaattcactaaaaccaagcccttaaacattgcaggatatat 13446263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 166 - 383
Target Start/End: Complemental strand, 13453319 - 13453102
Alignment:
Q  166 atttcacattatttgtagggagaaagttagtagctggaagtttgattggagggataaaggagactcaagaaatgattgattttgcggcagaacacaatgt 265  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  13453319 atttcacattattggtagggagaaagatagtagcaggaagtttgattggagggatcaaggagactcaagaaatgattgattttgcggcggaacacaatgt 13453220  T
Q  266 aaaacctgatattgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaagcagacgtgaaatatcgattcgttattgatattgga 365  Q
    ||| |||||||||||| |  ||||||||||||||||||||||||| |||||||| ||    |||||||| |||||||||||||| || ||||||||||||    
T  13453219 aaagcctgatattgagatcattcctattgattatgtcaacacagcgatggagcgccttcttaaagcagatgtgaaatatcgatttgtgattgatattgga 13453120  T
Q  366 aatacactaaaaccaagc 383  Q
    || ||| ||||| |||||    
T  13453119 aacacattaaaatcaagc 13453102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 158 - 402
Target Start/End: Complemental strand, 13412552 - 13412308
Alignment:
Q  158 ttgtattaatttcacattatttgtagggagaaagttagtagctggaagtttgattggagggataaaggagactcaagaaatgattgattttgcggcagaa 257  Q
    |||| ||||||||| ||||||  ||||||||||  || |||||||||||    |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  13412552 ttgtgttaatttcatattattgatagggagaaaaatattagctggaagtcaagttggagggttaaaggagactcaagaaatgattaattttgcggcagaa 13412453  T
Q  258 cacaatgtaaaacctgatattgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaagcagacgtgaaatatcgattcgttattg 357  Q
    ||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||| ||||||| |  || | |||||||||||||||||| || ||||    
T  13412452 cacaatgtaaagccggatatcgaggttgttccgattgattatgtcaacacagcaatgcagcgtcttgctaagggagacgtgaaatatcgatttgtgattg 13412353  T
Q  358 atattggaaatacactaaaaccaagcccttaaacaatgcaggata 402  Q
    |||||||||| ||||| ||||||||| ||| |||  |||||||||    
T  13412352 atattggaaacacactgaaaccaagctcttgaactttgcaggata 13412308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 213 - 390
Target Start/End: Original strand, 13411596 - 13411773
Alignment:
Q  213 ggagggataaaggagactcaagaaatgattgattttgcggcagaacacaatgtaaaacctgatattgaggttgttcctattgattatgtcaacacagcaa 312  Q
    ||||| || ||||| |||||||| |||||||||||||| ||  ||||||||||| ||||||||||||| ||  | ||||| |||||||||||||||||||    
T  13411596 ggaggaatgaaggaaactcaagagatgattgattttgctgctaaacacaatgtacaacctgatattgaagtcatacctatggattatgtcaacacagcaa 13411695  T
Q  313 tggagcgtctcgagaaagcagacgtgaaatatcgattcgttattgatattggaaatacactaaaaccaagcccttaaa 390  Q
    |||||||| || | ||| |||| || ||||||||||| || ||||| ||| |||| || || ||| ||||||||||||    
T  13411696 tggagcgtgtccacaaatcagatgttaaatatcgatttgtgattgacattagaaacactcttaaaacaagcccttaaa 13411773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 297
Target Start/End: Complemental strand, 13449025 - 13448892
Alignment:
Q  166 atttcacattatttgtagggagaaagttagtagctggaagtttgattggagggataa--aggagactcaagaaatgattgattttgcggcagaacacaat 263  Q
    |||| |||||||| |||||| ||||| ||||||||  |||||| ||||||| ||| |  | |||||||||||||||||||||||||| ||||||||||||    
T  13449025 attttacattattggtagggggaaagatagtagcttaaagtttaattggagagatgataaagagactcaagaaatgattgattttgcagcagaacacaat 13448926  T
Q  264 gtaaaacctgatattgaggttgttcctattgatt 297  Q
    ||||| ||||||| ||||||||||||||| ||||    
T  13448925 gtaaagcctgatactgaggttgttcctatcgatt 13448892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 182 - 367
Target Start/End: Complemental strand, 13372696 - 13372511
Alignment:
Q  182 agggagaaagttagtagctggaagtttgattggagggataaaggagactcaagaaatgattgattttgcggcagaacacaatgtaaaacctgatattgag 281  Q
    |||||||||| || | | ||| ||| |||||||||||||||||||||| |||||||||||||||||||| ||  ||||  |||| |||||||||||||||    
T  13372696 agggagaaagataattggtgggagtatgattggagggataaaggagacacaagaaatgattgattttgcagccaaacatgatgtgaaacctgatattgag 13372597  T
Q  282 gttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaagcagacgtgaaatatcgattcgttattgatattggaaa 367  Q
    ||| |||| || |||||||| || |  |||||||| |||||    ||||| || ||||||||||| || |||||||| ||||||||    
T  13372596 gttattccaatagattatgtgaatagtgcaatggatcgtctactcaaagctgatgtgaaatatcgctttgttattgacattggaaa 13372511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 173 - 382
Target Start/End: Original strand, 13386045 - 13386254
Alignment:
Q  173 attatttgtagggagaaagttagtagctggaagtttgattggagggataaaggagactcaagaaatgattgattttgcggcagaacacaatgtaaaacct 272  Q
    |||||| | |||||||||| | ||||||||||||   |||||| | || |||||||||||||| ||| |||| ||||| ||  |||||||||||||||||    
T  13386045 attattggcagggagaaagctggtagctggaagtggaattggaagcattaaggagactcaagagatgcttgaatttgctgctaaacacaatgtaaaacct 13386144  T
Q  273 gatattgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaagcagacgtgaaatatcgattcgttattgatattggaaatacac 372  Q
    || ||||| ||||||||| | |||||||| ||||||||||| ||||| |||   |||||||| || ||||||||||| ||  | || |||||||| || |    
T  13386145 gacattgaagttgttcctgtggattatgttaacacagcaattgagcgactcctcaaagcagatgtcaaatatcgatttgtgctcgacattggaaacactc 13386244  T
Q  373 taaaaccaag 382  Q
    | ||||||||    
T  13386245 tgaaaccaag 13386254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 177 - 367
Target Start/End: Complemental strand, 13378439 - 13378249
Alignment:
Q  177 tttgtagggagaaagttagtagctggaagtttgattggagggataaaggagactcaagaaatgattgattttgcggcagaacacaatgtaaaacctgata 276  Q
    |||||||||||||||  | | | ||| ||| ||||||||||||| ||||| || |||||||||||||||||||| ||  ||||    |||||||||||||    
T  13378439 tttgtagggagaaagacaattggtgggagtatgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgata 13378340  T
Q  277 ttgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaagcagacgtgaaatatcgattcgttattgatattggaaa 367  Q
    |||||||||||||  | |||||||| || || |||||||| ||  | |  ||||| || |||||||||||||| |||||||| ||||||||    
T  13378339 ttgaggttgttccagtggattatgtaaatactgcaatggaacgcttagtcaaagctgatgtgaaatatcgatttgttattgacattggaaa 13378249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 182 - 349
Target Start/End: Original strand, 13389842 - 13390009
Alignment:
Q  182 agggagaaagttagtagctggaagtttgattggagggataaaggagactcaagaaatgattgattttgcggcagaacacaatgtaaaacctgatattgag 281  Q
    |||||||||| | ||||| ||||||   |||||||| || |||||||||||||| ||| |||| ||||| ||  ||||||  ||||||||||| |||||     
T  13389842 agggagaaagctggtagccggaagtaatattggaggcatcaaggagactcaagagatgcttgactttgctgctaaacacagcgtaaaacctgacattgaa 13389941  T
Q  282 gttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaagcagacgtgaaatatcgatt 349  Q
    || |||||| | |||||||| ||||||||||| ||||| |||   |||||||| || |||||||||||    
T  13389942 gtcgttcctgtggattatgttaacacagcaattgagcgactcctcaaagcagatgtcaaatatcgatt 13390009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 13446589 - 13446533
Alignment:
Q  29 acttcctgtattttctttacttggaggtaagcatatgaaaaatatttccatatatac 85  Q
    ||||||| |||||||||||||||||||||||||||||||||||| || |||||||||    
T  13446589 acttcctatattttctttacttggaggtaagcatatgaaaaatacttgcatatatac 13446533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 349
Target Start/End: Original strand, 13394330 - 13394469
Alignment:
Q  210 attggagggataaaggagactcaagaaatgattgattttgcggcagaacacaatgtaaaacctgatattgaggttgttcctattgattatgtcaacacag 309  Q
    |||||||| || || ||||| |||||||||||||||||||| ||  |||||||| ||||||| || || || ||  | ||  | |||||||| |||||||    
T  13394330 attggaggcatgaaagagacacaagaaatgattgattttgctgctaaacacaatataaaaccagacatcgaagtcataccagtggattatgttaacacag 13394429  T
Q  310 caatggagcgtctcgagaaagcagacgtgaaatatcgatt 349  Q
    ||||| |||| |||   |||||||| || |||||||||||    
T  13394430 caatgaagcgactcctcaaagcagatgtcaaatatcgatt 13394469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 84
Target Start/End: Complemental strand, 13412671 - 13412640
Alignment:
Q  53 aggtaagcatatgaaaaatatttccatatata 84  Q
    ||||||||||||||||||||||||||||||||    
T  13412671 aggtaagcatatgaaaaatatttccatatata 13412640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 182 - 390
Target Start/End: Complemental strand, 47600665 - 47600457
Alignment:
Q  182 agggagaaagttagtagctggaagtttgattggagggataaaggagactcaagaaatgattgattttgcggcagaacacaatgtaaaacctgatattgag 281  Q
    |||||||||| ||||||||||||||   ||||||||||| |||||||||||||| ||| |||||||||| ||  |||||||||||||||||   |||||     
T  47600665 agggagaaagatagtagctggaagtaatattggagggatgaaggagactcaagatatgcttgattttgctgctaaacacaatgtaaaacctaccattgaa 47600566  T
Q  282 gttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaagcagacgtgaaatatcgattcgttattgatattggaaatacactaaaaccaa 381  Q
    ||  | ||||| |||||||| ||||| ||||||||||| |||   |||||||| || ||||||||||| || ||||| |||||||| || || |||||||    
T  47600565 gtcatccctatggattatgttaacactgcaatggagcgactcctcaaagcagatgtcaaatatcgatttgtgattgacattggaaacactctcaaaccaa 47600466  T
Q  382 gcccttaaa 390  Q
    || ||||||    
T  47600465 gctcttaaa 47600457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 371
Target Start/End: Original strand, 28431499 - 28431693
Alignment:
Q  177 tttgtagggagaaagttagtagctggaagtttgattggagggataaaggagactcaagaaatgattgattttgcggcagaacacaatgtaaaacctgata 276  Q
    ||||||||||||||| || |||  || ||  |||| ||||| || |||||||| ||||||||||| |||||||| ||  ||||  | || |||||||| |    
T  28431499 tttgtagggagaaagataataggagggagcctgatcggaggaattaaggagacacaagaaatgatagattttgctgctaaacatgacgtgaaacctgaaa 28431598  T
Q  277 ttgaggttgttcctattgattatgtcaacacagcaatggagcgtctcgagaaagcagacgtgaaatatcgattcgttattgatattggaaataca 371  Q
    |||| |||||| |   ||||||||| ||||| ||| ||||||||||    |||||||| || ||||||||||| |||||||||||||| ||||||    
T  28431599 ttgaagttgtttcagctgattatgtgaacactgcattggagcgtctgcttaaagcagatgtcaaatatcgatttgttattgatattgggaataca 28431693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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