View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_high_3 (Length: 648)

Name: NF1250_high_3
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_high_3
NF1250_high_3
[»] chr4 (4 HSPs)
chr4 (161-619)||(51864180-51864638)
chr4 (21-167)||(51863535-51863682)
chr4 (14-118)||(39479887-39479992)
chr4 (82-144)||(13757133-13757199)
[»] chr7 (2 HSPs)
chr7 (14-142)||(9330698-9330823)
chr7 (97-142)||(48644160-48644209)
[»] chr3 (10 HSPs)
chr3 (21-142)||(22155376-22155501)
chr3 (14-142)||(21972645-21972778)
chr3 (14-142)||(21995076-21995209)
chr3 (81-143)||(15212736-15212802)
chr3 (81-143)||(15251955-15252021)
chr3 (81-121)||(6079872-6079912)
chr3 (85-154)||(11028061-11028132)
chr3 (88-142)||(23218138-23218195)
chr3 (79-142)||(53157279-53157346)
chr3 (90-143)||(46124027-46124084)
[»] chr6 (11 HSPs)
chr6 (77-121)||(32616923-32616967)
chr6 (80-144)||(17724572-17724640)
chr6 (90-145)||(19382999-19383058)
chr6 (80-120)||(18670230-18670270)
chr6 (85-145)||(21393423-21393487)
chr6 (83-121)||(13548363-13548401)
chr6 (85-152)||(19214771-19214842)
chr6 (85-143)||(18801471-18801533)
chr6 (81-142)||(8909959-8910024)
chr6 (77-121)||(14603752-14603796)
chr6 (90-143)||(23160781-23160838)
[»] scaffold0337 (1 HSPs)
scaffold0337 (75-142)||(776-847)
[»] scaffold0041 (1 HSPs)
scaffold0041 (85-142)||(32277-32336)
[»] chr8 (1 HSPs)
chr8 (89-142)||(23120522-23120579)
[»] scaffold0072 (1 HSPs)
scaffold0072 (90-142)||(46284-46340)
[»] chr5 (2 HSPs)
chr5 (90-142)||(22362557-22362613)
chr5 (90-142)||(38925437-38925493)
[»] chr2 (4 HSPs)
chr2 (90-142)||(2707137-2707193)
chr2 (85-144)||(25417078-25417141)
chr2 (88-121)||(25330897-25330930)
chr2 (85-142)||(24863912-24863973)
[»] scaffold0320 (1 HSPs)
scaffold0320 (88-121)||(14206-14239)
[»] scaffold0164 (1 HSPs)
scaffold0164 (85-141)||(5198-5257)
[»] scaffold0077 (1 HSPs)
scaffold0077 (80-142)||(52530-52596)
[»] chr1 (3 HSPs)
chr1 (88-121)||(22040011-22040044)
chr1 (85-142)||(15723288-15723349)
chr1 (82-143)||(44201666-44201731)
[»] scaffold0553 (1 HSPs)
scaffold0553 (90-143)||(6548-6605)


Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 161 - 619
Target Start/End: Original strand, 51864180 - 51864638
Alignment:
Q  161 tcttaaatatatgagcatagcagaagaaagaagcaaagataattcaagagaaaaactgttccattgacggcaactaacaccttgtataaaatccttttct 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51864180 tcttaaatatatgagcatagcagaagaaagaagcaaagataattcaagagaaaaactgttccattgacggcaactaacaccttgtataaaatctttttct 51864279  T
Q  261 ttcacggtatagtttactttctattgcaagtgaaaacttgcacgcctatccttataaaactatacaacaaccgctaaattaaaactgaagacttactcat 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51864280 ttcacggtatagtttactttctattgcaagtgaaaacttgcacgcctatccttataaaactatataacaaccgctaaattaaaactgaagacttactcat 51864379  T
Q  361 atacatttccnnnnnnnctaaattaatagcaatttctatgcagtaaaatacaataatcttgagacagagtagctttcatccgtcgtttccagaacagcat 460  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51864380 atacatttccaaaaaaactaaattaatagcaatttctatgcagtaaaatacaataatcttgagacagagtagctttcatccgtcgtttccagaacagcat 51864479  T
Q  461 atatgtgaacagcaattgaggcaggcgaggcatcccagaccaatgcaaagctgattcaatgcagtaagacattggttgttcatcctggaaaagcactgga 560  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51864480 atatgtgaacagcaattgaggcaggcgagacatcccagaccaatgcaaagctgattcaatgcagtaagacattggttgttcatcctggaaaagcactgga 51864579  T
Q  561 tgcagcacatgcaacaacaataaccacacacggtgtcaaagcaatttgaggccgcttta 619  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51864580 tgcagcacatgcaacaacaataaccacacacggtgtcaaagcaatttgaggccgcttta 51864638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 51863535 - 51863682
Alignment:
Q  21 aaaatgcaattattatagactatatattaatttattttatacnnnnnnn-caaagtgaaatatatatgcattagcgtagtagaaaaagcggacagacggg 119  Q
    |||||||| |||||||||||||||||||||||||||||||||        |||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  51863535 aaaatgcagttattatagactatatattaatttattttatacaaaaataacaaagtgaaatatatatgcgctagcgtagtagaaaaaacggacagacggg 51863634  T
Q  120 caagtgtccgtctggacgctagtgaaataataaagacaatatcttaaa 167  Q
    ||  || ||||||||| |||||||||||||||||||||||||||||||    
T  51863635 cacttgcccgtctggatgctagtgaaataataaagacaatatcttaaa 51863682  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 39479992 - 39479887
Alignment:
Q  14 aggcatgaaaatgcaattattatagactatatattaatttattttatacnnnnnnn-caaagtgaaatatatatgcattagcgtagtagaaaaagcggac 112  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||||||        ||||||||||||||||||  ||||| |||||||||||||||||    
T  39479992 aggcacgaaaatgcagttattatatactatatattaatttattttatacaaaaaaaacaaagtgaaatatatatgtgttagcatagtagaaaaagcggac 39479893  T
Q  113 agacgg 118  Q
    ||||||    
T  39479892 agacgg 39479887  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 13757199 - 13757133
Alignment:
Q  82 tatatgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtga 144  Q
    |||||||||||| | |||||||| |||| |||||||||||    |||| ||||||||||||||||||    
T  13757199 tatatgcattagtgcagtagaaagagcgaacagacgggcacgggagtgcccgtctggacgctagtga 13757133  T

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Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 9330823 - 9330698
Alignment:
Q  14 aggcatgaaaatgcaattattatagactatatattaatttattttatacnnnnnnncaaagtgaaatatatatgcattagcgtagtagaaaaagcggaca 113  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||||||||||||||||||    
T  9330823 aggcatgaaaatgcagttattatagactatatattaatttattttatacaaaaaa-caaagtgaaatatatatgcgttagcgtagtagaaaaagcggaca 9330725  T
Q  114 gacgggcaagtgtccgtctggacgctagt 142  Q
    ||||||  |||| ||||||||| ||||||    
T  9330724 gacggg--agtgcccgtctggatgctagt 9330698  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 48644160 - 48644209
Alignment:
Q  97 agtagaaaaagcggacagacgggca----agtgtccgtctggacgctagt 142  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||    
T  48644160 agtagaaaaagcggacagacgggcacgagagtgtccgtctggacgctagt 48644209  T

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Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 22155501 - 22155376
Alignment:
Q  21 aaaatgcaattattatagactatatattaatttattttatacnnnnnnncaaagtgaaatatatatgcattagcgtagtagaaaaagcggacagacgggc 120  Q
    ||||| || |||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  22155501 aaaatacagttattatagactatatattaatttattttatacaaaaaaacaaagtgaaatatatatgcgttagcgtagtagaaaaaacggacagacgggc 22155402  T
Q  121 a----agtgtccgtctggacgctagt 142  Q
    |    |||||||||||||||||||||    
T  22155401 acgggagtgtccgtctggacgctagt 22155376  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 21972778 - 21972645
Alignment:
Q  14 aggcatgaaaatgcaattattatagactatatattaatttattttatacnnnnnnn-caaagtgaaatatatatgcattagcgtagtagaaaaagcggac 112  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||        ||||||||||||||||||  |||||||||||||||||||||||    
T  21972778 aggcacgaaaatgcagttattatagactatatattaatttattttatacaaaaaaaacaaagtgaaatatatatgtgttagcgtagtagaaaaagcggac 21972679  T
Q  113 agacgggca----agtgtccgtctggacgctagt 142  Q
    | |||||||    |||| ||||||||||||||||    
T  21972678 aaacgggcacgggagtgcccgtctggacgctagt 21972645  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 21995209 - 21995076
Alignment:
Q  14 aggcatgaaaatgcaattattatagactatatattaatttattttatacnnnnnnn-caaagtgaaatatatatgcattagcgtagtagaaaaagcggac 112  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||        ||||||||||||||||||  |||||||||||||||||||||||    
T  21995209 aggcacgaaaatgcagttattatagactatatattaatttattttatacaaaaaaaacaaagtgaaatatatatgtgttagcgtagtagaaaaagcggac 21995110  T
Q  113 agacgggca----agtgtccgtctggacgctagt 142  Q
    | |||||||    |||| ||||||||||||||||    
T  21995109 aaacgggcacgggagtgcccgtctggacgctagt 21995076  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 15212802 - 15212736
Alignment:
Q  81 atatatgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtg 143  Q
    |||||||| |||||| |||||||||||||||||||||||||    |||| || ||||||||||||||    
T  15212802 atatatgcgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccatctggacgctagtg 15212736  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 15252021 - 15251955
Alignment:
Q  81 atatatgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtg 143  Q
    |||||||| |||||| |||||||||||||||||||||||||    |||| || ||||||||||||||    
T  15252021 atatatgcgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccatctggacgctagtg 15251955  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 6079872 - 6079912
Alignment:
Q  81 atatatgcattagcgtagtagaaaaagcggacagacgggca 121  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  6079872 atatatgcgttagcgcagtagaaaaagcggacagacgggca 6079912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 11028132 - 11028061
Alignment:
Q  85 atgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtgaaataataaag 154  Q
    |||| |||||| |||||||||||||||||||||||||    |||| |||||||||||||||| |||||||||||    
T  11028132 atgcgttagcgcagtagaaaaagcggacagacgggcacgggagtg-ccgtctggacgctagt-aaataataaag 11028061  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 23218195 - 23218138
Alignment:
Q  88 cattagcgtagtagaaaaagcggacagacgggca---agtgtccgtctggacgctagt 142  Q
    |||||||||||||||||||||| | |||||||||    ||||||||||||||||||||    
T  23218195 cattagcgtagtagaaaaagcgtagagacgggcactccgtgtccgtctggacgctagt 23218138  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 53157346 - 53157279
Alignment:
Q  79 atatatatgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagt 142  Q
    ||||| || |||||||| |||||||| ||||||||||||||||    |||| ||||||||||||||||    
T  53157346 atatagatacattagcgcagtagaaagagcggacagacgggcacgagagtgcccgtctggacgctagt 53157279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 46124084 - 46124027
Alignment:
Q  90 ttagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtg 143  Q
    |||||| |||||||||||||||||||||||||    |||| ||||||| |||||||||    
T  46124084 ttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctgaacgctagtg 46124027  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 32616967 - 32616923
Alignment:
Q  77 aaatatatatgcattagcgtagtagaaaaagcggacagacgggca 121  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  32616967 aaatatatatgcgttagcgtagtagaaaaagcggacagacgggca 32616923  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 17724572 - 17724640
Alignment:
Q  80 tatatatgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtga 144  Q
    ||||||||  |||||| |||||||||||||||||||||||||    |||| ||||||||||||||||||    
T  17724572 tatatatgtgttagcgcagtagaaaaagcggacagacgggcatgggagtgcccgtctggacgctagtga 17724640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 19382999 - 19383058
Alignment:
Q  90 ttagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtgaa 145  Q
    |||||| |||||||||||||||||||||||||    |||| |||||||||||||||||||    
T  19382999 ttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagtgaa 19383058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 18670230 - 18670270
Alignment:
Q  80 tatatatgcattagcgtagtagaaaaagcggacagacgggc 120  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  18670230 tatatatgcgttagcgcagtagaaaaagcggacagacgggc 18670270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 21393423 - 21393487
Alignment:
Q  85 atgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtgaa 145  Q
    |||| |||||| |||||||| ||||||||||||||||    |||| |||||||||||||||||||    
T  21393423 atgcgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagtgaa 21393487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 13548401 - 13548363
Alignment:
Q  83 atatgcattagcgtagtagaaaaagcggacagacgggca 121  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  13548401 atatgcgttagcgcagtagaaaaagcggacagacgggca 13548363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 19214842 - 19214771
Alignment:
Q  85 atgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtgaaataataa 152  Q
    |||| ||||||  ||||||||||||||||||||||||    |||| ||||||||||||||||  ||||||||    
T  19214842 atgcgttagcgcggtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagtttaataataa 19214771  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 18801471 - 18801533
Alignment:
Q  85 atgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtg 143  Q
    |||||||||||||||||||| |||| |||||||||||    |||| |||| ||||||||||||    
T  18801471 atgcattagcgtagtagaaagagcgaacagacgggcacgggagtgcccgtttggacgctagtg 18801533  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 8909959 - 8910024
Alignment:
Q  81 atatatgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagt 142  Q
    |||||||| || ||| |||||||||||||| ||||||||||    |||| ||||||||||||||||    
T  8909959 atatatgcgtttgcgcagtagaaaaagcgggcagacgggcacgagagtgcccgtctggacgctagt 8910024  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 14603796 - 14603752
Alignment:
Q  77 aaatatatatgcattagcgtagtagaaaaagcggacagacgggca 121  Q
    ||||||| |||| |||| | |||||||||||||||||||||||||    
T  14603796 aaatatacatgcgttagtgcagtagaaaaagcggacagacgggca 14603752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 23160781 - 23160838
Alignment:
Q  90 ttagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtg 143  Q
    |||||| |||||||| ||||||||||||||||    |||| |||||||||||||||||    
T  23160781 ttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagtg 23160838  T

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Target: scaffold0337 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 776 - 847
Alignment:
Q  75 tgaaatatatatgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagt 142  Q
    |||| ||||||||| |||||| |||||||||||||||||||||||||    |||| ||||||||||||||||    
T  776 tgaagtatatatgcgttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 847  T

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Target: scaffold0041 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 32277 - 32336
Alignment:
Q  85 atgcattagcgtagtagaaaaagcggacagacgggca--agtgtccgtctggacgctagt 142  Q
    |||| |||||| |||||||||||||||||||||||||  |||| ||||||| ||||||||    
T  32277 atgcgttagcgcagtagaaaaagcggacagacgggcactagtgcccgtctgtacgctagt 32336  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 23120579 - 23120522
Alignment:
Q  89 attagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagt 142  Q
    ||||||| ||||||||||||||||||| |||||    |||||||||||||||||||||    
T  23120579 attagcgcagtagaaaaagcggacagatgggcacgggagtgtccgtctggacgctagt 23120522  T

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Target: scaffold0072 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 46340 - 46284
Alignment:
Q  90 ttagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagt 142  Q
    |||||| |||||||||||||||||||||||||    |||| ||||||||||||||||    
T  46340 ttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 46284  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 22362613 - 22362557
Alignment:
Q  90 ttagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagt 142  Q
    |||||| |||||||||||||||||||||||||    |||| ||||||||||||||||    
T  22362613 ttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 22362557  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 38925493 - 38925437
Alignment:
Q  90 ttagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagt 142  Q
    ||||||||||||||| ||||||||||||||||    |||| ||||||||||||||||    
T  38925493 ttagcgtagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 38925437  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 2707137 - 2707193
Alignment:
Q  90 ttagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagt 142  Q
    |||||| |||||||||||||||||||||||||    |||| ||||||||||||||||    
T  2707137 ttagcgcagtagaaaaagcggacagacgggcacgggagtgcccgtctggacgctagt 2707193  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 25417141 - 25417078
Alignment:
Q  85 atgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtga 144  Q
    |||| |||||| |||||||| ||||||||||||||||    ||||||| |||||||||||||||    
T  25417141 atgcgttagcgcagtagaaagagcggacagacgggcacaggagtgtccatctggacgctagtga 25417078  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 25330930 - 25330897
Alignment:
Q  88 cattagcgtagtagaaaaagcggacagacgggca 121  Q
    |||||||| |||||||||||||||||||||||||    
T  25330930 cattagcgcagtagaaaaagcggacagacgggca 25330897  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 24863973 - 24863912
Alignment:
Q  85 atgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagt 142  Q
    |||| |||||| |||||||||||||||||||| ||||    |||| ||||||||||||||||    
T  24863973 atgcgttagcgcagtagaaaaagcggacagacaggcacgagagtgcccgtctggacgctagt 24863912  T

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Target: scaffold0320 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 121
Target Start/End: Original strand, 14206 - 14239
Alignment:
Q  88 cattagcgtagtagaaaaagcggacagacgggca 121  Q
    ||||||||||||||||| ||||||||||||||||    
T  14206 cattagcgtagtagaaagagcggacagacgggca 14239  T

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Target: scaffold0164 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 5198 - 5257
Alignment:
Q  85 atgcattagcgtagtagaaaaagcggacagacgggca---agtgtccgtctggacgctag 141  Q
    |||||||| || ||||||||||||| ||||||||| |   ||||||||||||||||||||    
T  5198 atgcattaacgcagtagaaaaagcgaacagacgggaacggagtgtccgtctggacgctag 5257  T

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Target: scaffold0077 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 52530 - 52596
Alignment:
Q  80 tatatatgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagt 142  Q
    |||| |||| |||||| |||||||| ||||||||||||||||    |||| ||||||||||||||||    
T  52530 tatacatgcgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 52596  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 121
Target Start/End: Complemental strand, 22040044 - 22040011
Alignment:
Q  88 cattagcgtagtagaaaaagcggacagacgggca 121  Q
    ||||||||| ||||||||||||||||||||||||    
T  22040044 cattagcgtggtagaaaaagcggacagacgggca 22040011  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 15723288 - 15723349
Alignment:
Q  85 atgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagt 142  Q
    |||| |||||| |||||||| ||||||||||||||||    |||| ||||||||||||||||    
T  15723288 atgcgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctggacgctagt 15723349  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 44201666 - 44201731
Alignment:
Q  82 tatatgcattagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtg 143  Q
    ||||||| |||||| |||||||| ||||||||||||||||    |||| |||||| ||||||||||    
T  44201666 tatatgcgttagcgcagtagaaagagcggacagacgggcacgggagtgcccgtctagacgctagtg 44201731  T

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Target: scaffold0553 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 6605 - 6548
Alignment:
Q  90 ttagcgtagtagaaaaagcggacagacgggca----agtgtccgtctggacgctagtg 143  Q
    |||||| ||||||||||||||||||||||| |    |||| |||||||||||||||||    
T  6605 ttagcgcagtagaaaaagcggacagacgggtacgggagtgcccgtctggacgctagtg 6548  T

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