View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_high_43 (Length: 334)

Name: NF1250_high_43
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_high_43
NF1250_high_43
[»] chr8 (1 HSPs)
chr8 (7-305)||(11200268-11200566)


Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 11200268 - 11200566
Alignment:
Q  7 tccaacaatatccttcgaaaataagaaaaacacaatcgcatgccactcgattcattttcatcgttacgtccaacactagcacgaatcataatattccacg 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11200268 tccaacaacatccttcgaaaataagaaaaacacaatcgcatgccactcgattcattttcatcgttacgtccaacactagcacgaatcataatattccacg 11200367  T
Q  107 aaacaacatttctcacaggcaattcctcaaacagtttctttgcatcttcagcttcttggcatttaagataaacactcaaaatctggttttgtaaggaaag 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11200368 aaacaacatttctcacaggcaattcctcaaacagtttctttgcatcttcagcttcttggcatttaagataaacactcaaaatctggttttgtaaggaaag 11200467  T
Q  207 gacttgacaaaatccaaactttatcaaatgggcatgtaactgttttccttcaggaagatagccctttttggctgagattttgagggcgttggaacaaaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11200468 gacttgacaaaatccaaactttatcaaatgggcatgtaactgttttccttcaggaagatagccctttttggctgagattttgagggcgttggaacaaaa 11200566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University