View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_high_44 (Length: 333)
Name: NF1250_high_44
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 47262644 - 47262836
Alignment:
| Q |
8 |
gagcagagaaagatcacatccatagaggtagatttgaatgaaaatggatataaacataaatctaaatgaacagaacctgcataaattcacaaatcataga |
107 |
Q |
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| T |
47262644 |
gagcacagaaagatcacatccatagaggtagatttgaatgaaaatggatataaacataaatctaaatgaacagaacctgcataaattcacaaatcataga |
47262743 |
T |
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| Q |
108 |
taatccaacttgaagataagagtat--nnnnnnnnnnngttacggaagtaagagaaaacaaattaaaagtggagattcatttagattcggttttatt |
202 |
Q |
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| T |
47262744 |
taatccaacttgaagataagagtataaaaaaaaaaaaagttacggaagtaagagaaaaca----aaaagtggagattcatttagattcggttttatt |
47262836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 47262927 - 47263031
Alignment:
| Q |
201 |
ttctactaaacttcacttactctaaagctagaaataatttgtattttttactcgtttaggaaccatgatgacaatgtctcatgtaagaggataatggtta |
300 |
Q |
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| T |
47262927 |
ttctactaaacttcacttactctaaagctagaattaatttgcattttttactcgtttaggaaccatgatgacaatgtctcatgtaagaggataatggtta |
47263026 |
T |
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| Q |
301 |
tttat |
305 |
Q |
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| T |
47263027 |
tttat |
47263031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 37466045 - 37466101
Alignment:
| Q |
14 |
agaaagatcacatccatagaggtagatttgaatgaaaatggatataaacataaatcta |
71 |
Q |
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| T |
37466045 |
agaaaaatcacattcatagaagtagatttgaatg-aaatggatatgaacataaatcta |
37466101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 9296692 - 9296758
Alignment:
| Q |
48 |
aaaatggatataaacataaatctaaatgaacagaacctgcat-aaattcacaaatcatagataatcc |
113 |
Q |
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| T |
9296692 |
aaaatggatatgaacataaatttaaataaacagaacctgcatcaaattcccaaatcatagataatcc |
9296758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 9285938 - 9286021
Alignment:
| Q |
37 |
agatttgaatgaaaatggatataaacataaatctaaatgaacagaacctgcat-aaattcacaaatcatagataatccaacttgaaga |
123 |
Q |
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| T |
9285938 |
agatttgaataaaaatggatatgaacatt----taaatgaacagaacctgcataaaattcccaactcatagatattccagcttgaaga |
9286021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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