View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250_high_47 (Length: 315)
Name: NF1250_high_47
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250_high_47 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 2 - 315
Target Start/End: Original strand, 47262360 - 47262673
Alignment:
| Q |
2 |
gcatgtccaacaatattgtgtaaattaggcgctacaaaattccaataaatcataaacgaaaaccaaaagtgtatactttgcaactatgatctgacacagt |
101 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262360 |
gcatatccaacaagattgtgtaaattaggcgctacaaaattccaataaatcataaacgaaaaccaaaagtgtatactttgcaactatgatctgacacagt |
47262459 |
T |
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| Q |
102 |
ataacagtataacaaaatgaacatggcttaagcttgcccatgaactaaaacaagggctacaattgttgtgcacaaatcaataacatacatattcaatttt |
201 |
Q |
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| T |
47262460 |
ataacagtataacaaaatgaacatggcttaagcttgcccatgaactaaaacaagggctacaattgttgtgcacaaatcaataacatacatattcaatttt |
47262559 |
T |
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| Q |
202 |
ctaaaataaaaaacatgcatgtagaagattgaaagctcgaagagggaatgaatcattggagaatctaagcaaagagagtaacctgagcacagaaagatca |
301 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262560 |
ctaaaataaaaaacatgcatgtagaagattgaaagcacaaagagggaatgaatcattggagaatctaagcaaagagagtaacctgagcacagaaagatca |
47262659 |
T |
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| Q |
302 |
catccatagaggta |
315 |
Q |
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| T |
47262660 |
catccatagaggta |
47262673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 37465865 - 37465926
Alignment:
| Q |
35 |
acaaaattccaataaatcataaacgaaaaccaaaagtgtatactttgcaactatgatctgac |
96 |
Q |
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| T |
37465865 |
acaaaattcaaataaatcaaaaactaaaaccaaaagtatatactttgcaactgtaatctgac |
37465926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 144 - 305
Target Start/End: Original strand, 9295674 - 9295835
Alignment:
| Q |
144 |
aactaaaacaagggctacaattgttgtgcacaaatcaataacatacatattcaattttctaaaataaaaaacatgcatgtagaagattgaaagctcgaag |
243 |
Q |
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| T |
9295674 |
aactaaaacaagggctacaattgttgtgcacaaatcaataacatacatattcaattttctaaaataagaaacatgcatatagaagattgaaagcagtaag |
9295773 |
T |
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| Q |
244 |
agggaatgaatcattggagaatctaagcaaagagagtaacctgagcacagaaagatcacatc |
305 |
Q |
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| T |
9295774 |
agggaatgaatcatcagagaatgtgagcaaagagaagaatctgagcacagaaaaatcacatc |
9295835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 8576237 - 8576176
Alignment:
| Q |
102 |
ataacagtataacaaaa-tgaacatggcttaagcttgcccatgaactaaaacaagggctaca |
162 |
Q |
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| T |
8576237 |
ataacagtataacaaaaatgaaaatggcttgagcctgcacatgaactaaaacaaggactaca |
8576176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 9285868 - 9285928
Alignment:
| Q |
244 |
agggaatgaatcattggagaatctaagcaaagagagtaacctgagcacagaaagatcacat |
304 |
Q |
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| T |
9285868 |
agggaatgaatcatcagagaatgtgagcaaagagaagaatctgagcacagaaaaatcacat |
9285928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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