View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_high_56 (Length: 304)

Name: NF1250_high_56
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_high_56
NF1250_high_56
[»] chr7 (3 HSPs)
chr7 (91-299)||(3587425-3587633)
chr7 (1-73)||(3587365-3587437)
chr7 (11-72)||(7111132-7111193)
[»] chr1 (5 HSPs)
chr1 (171-293)||(10007332-10007454)
chr1 (120-213)||(9994609-9994702)
chr1 (183-293)||(9977239-9977346)
chr1 (1-68)||(9997368-9997435)
chr1 (261-293)||(9996383-9996415)
[»] chr3 (3 HSPs)
chr3 (171-213)||(5670783-5670825)
chr3 (171-213)||(5680276-5680318)
chr3 (172-213)||(5694428-5694469)
[»] chr4 (1 HSPs)
chr4 (171-211)||(9429790-9429830)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 91 - 299
Target Start/End: Original strand, 3587425 - 3587633
Alignment:
Q  91 aactacaccaataatcattacctgattaattctatatccgctgtatggctagatctgtcgattttgttattacaaaacagtattatttctctttctcttc 190  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3587425 aactacaccaataatcattacctgattaattctatatccgctgcatggctagatctgtcgattttgttattacaaaactgtattatttctctttctcttc 3587524  T
Q  191 ttgcaacaataatcattgtaaagatgtaacttctttttgacacataattgttcggatgatttgggaggctagatatggaattattttctcaactaagata 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3587525 ttgcaacaataatcattgtaaagatgtaacttctttttgacacataattgttcggatgatttgggaggctagatatggaattattttctcaactaagata 3587624  T
Q  291 ttgttggag 299  Q
    ||| |||||    
T  3587625 ttggtggag 3587633  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3587365 - 3587437
Alignment:
Q  1 cacaatcaaccacattacctgattaattcaaaccaactctttttgaaactaagttatactaactacaccaata 73  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3587365 cacaatcagccacattacctgattaattcaaaccaactctctttgaaactaagttatactaactacaccaata 3587437  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 7111132 - 7111193
Alignment:
Q  11 cacattacctgattaattcaaaccaactctttttgaaactaagttatactaactacaccaat 72  Q
    |||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  7111132 cacattaccccattaattcaaactaactcttgttgaaactaagttatactaactacaccaat 7111193  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 10007454 - 10007332
Alignment:
Q  171 tattatttctctttctcttcttgcaacaataatcattgtaaagatgtaacttctttttgacacataattgttcggatgatttgggaggctagatatggaa 270  Q
    |||||||| || |||  |||||||||||||||||||| ||||| |||||||  | ||||||||| ||  ||| ||| ||||||||||| || ||| ||||    
T  10007454 tattatttttcgttcatttcttgcaacaataatcattataaaggtgtaactcttatttgacacacaaccgtttggaagatttgggaggttaaataaggaa 10007355  T
Q  271 ttattttctcaactaagatattg 293  Q
    |||||||||||||||||||||||    
T  10007354 ttattttctcaactaagatattg 10007332  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 213
Target Start/End: Complemental strand, 9994702 - 9994609
Alignment:
Q  120 ttctatatccgctgtatggctagatctgtcgattttgttattacaaaacagtattatttctctttctcttcttgcaacaataatcattgtaaag 213  Q
    ||||||||||| || |||||||||||| | ||||  || ||||| | ||  ||||||||||| || ||||||||||||||||||||||||||||    
T  9994702 ttctatatccgttgcatggctagatctattgattccgtcattacgatactttattatttctccttttcttcttgcaacaataatcattgtaaag 9994609  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 293
Target Start/End: Complemental strand, 9977346 - 9977239
Alignment:
Q  183 ttctcttcttgcaacaataatcattgtaaagatgtaacttctttttgacacataattgttcggatgatttgggaggctagatatggaattattttctcaa 282  Q
    |||| |||||||||||||||||||| ||| |  ||||||  | |||||||||  || ||| |||  |||||||||| || ||||||||||||||||||||    
T  9977346 ttcttttcttgcaacaataatcattataaggc-gtaactcgtatttgacaca--atcgtttggaatatttgggaggttacatatggaattattttctcaa 9977250  T
Q  283 ctaagatattg 293  Q
    |||||||||||    
T  9977249 ctaagatattg 9977239  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9997435 - 9997368
Alignment:
Q  1 cacaatcaaccacattacctgattaattcaaaccaactctttttgaaactaagttatactaactacac 68  Q
    |||||||  ||||||||||  ||| |||||||| ||||||  |||||| |||||||||||||||||||    
T  9997435 cacaatcggccacattaccccatttattcaaactaactctcgttgaaattaagttatactaactacac 9997368  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 293
Target Start/End: Complemental strand, 9996415 - 9996383
Alignment:
Q  261 agatatggaattattttctcaactaagatattg 293  Q
    ||||| |||||||||||||||||||||||||||    
T  9996415 agataaggaattattttctcaactaagatattg 9996383  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 5670825 - 5670783
Alignment:
Q  171 tattatttctctttctcttcttgcaacaataatcattgtaaag 213  Q
    ||||||||||| | |||||||||||||||||||||||||||||    
T  5670825 tattatttctcctcctcttcttgcaacaataatcattgtaaag 5670783  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 5680318 - 5680276
Alignment:
Q  171 tattatttctctttctcttcttgcaacaataatcattgtaaag 213  Q
    ||||||||||| | |||||||||||||||||||||||||||||    
T  5680318 tattatttctcctcctcttcttgcaacaataatcattgtaaag 5680276  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 5694469 - 5694428
Alignment:
Q  172 attatttctctttctcttcttgcaacaataatcattgtaaag 213  Q
    |||||||||| | |||||||||||||||||||||||||||||    
T  5694469 attatttctcctcctcttcttgcaacaataatcattgtaaag 5694428  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 9429790 - 9429830
Alignment:
Q  171 tattatttctctttctcttcttgcaacaataatcattgtaa 211  Q
    ||||||||||||| || |||||||||||| |||||||||||    
T  9429790 tattatttctcttccttttcttgcaacaaaaatcattgtaa 9429830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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