View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1250_high_63 (Length: 273)

Name: NF1250_high_63
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1250_high_63
NF1250_high_63
[»] chr7 (9 HSPs)
chr7 (74-242)||(8414992-8415160)
chr7 (40-135)||(8410765-8410860)
chr7 (139-241)||(8361648-8361748)
chr7 (139-198)||(8350238-8350297)
chr7 (195-241)||(8411439-8411485)
chr7 (40-129)||(8349045-8349134)
chr7 (44-91)||(8361502-8361549)
chr7 (139-210)||(8480807-8480875)
chr7 (40-105)||(8355110-8355175)
[»] chr4 (1 HSPs)
chr4 (44-127)||(51650242-51650325)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 74 - 242
Target Start/End: Original strand, 8414992 - 8415160
Alignment:
Q  74 aagacaatggaaagatgaagtaaatggttcaagaaacaactcaagcacaaagttgcgattagtgaagtgattgtttcagccttcatgaaaatcgaatcta 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8414992 aagacaatggaaagatgaagtaaatggttcaagaaacaactcaagcacaaagttgcgattagtgaagtgattgtttcagccatcatgaaaatcgaatcta 8415091  T
Q  174 aataggttcagagcagatatattattatgccataaattcaaacaggaaaaacatgattatgcaattcat 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8415092 aataggttcagagcagatatattattatgccataaattcaaacaggaaaaacatgattatgcaattcat 8415160  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 8410765 - 8410860
Alignment:
Q  40 atttcacaccattcgcagttgacttgttgagagtaagacaatggaaagatgaagtaaatggttcaagaaacaactcaagcacaaagttgcgattag 135  Q
    |||||||||||||| || ||| || |||||||||| |||||||||||| || |||||||||||||| |||||| ||||||| ||| ||||||||||    
T  8410765 atttcacaccattcccaattgtctggttgagagtaggacaatggaaaggtgcagtaaatggttcaaaaaacaattcaagcagaaatttgcgattag 8410860  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 8361648 - 8361748
Alignment:
Q  139 agtgattgtttcagccttcatgaaaatcgaatctaaataggttcagagcagatatattattatgccataaattcaaacagg-aaaaacatgattatgcaa 237  Q
    ||||||||||| |||| | |||||||| ||||| ||||||||||||||||||||   |||||||||| ||||||||||||| ||||| |||||||| |||    
T  8361648 agtgattgttttagccataatgaaaattgaatcaaaataggttcagagcagata---tattatgccaaaaattcaaacaggaaaaaaaatgattattcaa 8361744  T
Q  238 ttca 241  Q
    ||||    
T  8361745 ttca 8361748  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 8350238 - 8350297
Alignment:
Q  139 agtgattgtttcagccttcatgaaaatcgaatctaaataggttcagagcagatatattat 198  Q
    |||||||  ||||||||||||||||||  |||||||||||||||||||||||| ||||||    
T  8350238 agtgattaattcagccttcatgaaaattaaatctaaataggttcagagcagatctattat 8350297  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 8411439 - 8411485
Alignment:
Q  195 ttattatgccataaattcaaacaggaaaaacatgattatgcaattca 241  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||    
T  8411439 ttattatgccaaaaattcaaacaggaaaaacatgattattcaattca 8411485  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 8349045 - 8349134
Alignment:
Q  40 atttcacaccattcgcagttgacttgttgagagtaagacaatggaaagatgaagtaaatggttcaagaaacaactcaagcacaaagttgc 129  Q
    |||||||| ||||  || |||| |||||||||||  ||||| ||||||||| |||||||||||| | ||||||||||| |||||| ||||    
T  8349045 atttcacatcatttccaattgatttgttgagagttggacaacggaaagatgcagtaaatggttctaaaaacaactcaaccacaaatttgc 8349134  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 8361502 - 8361549
Alignment:
Q  44 cacaccattcgcagttgacttgttgagagtaagacaatggaaagatga 91  Q
    |||||||||| || ||||||||||||||||| ||||||||||||||||    
T  8361502 cacaccattcccaattgacttgttgagagtaggacaatggaaagatga 8361549  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 8480875 - 8480807
Alignment:
Q  139 agtgattgtttcagccttcatgaaaatcgaatctaaataggttcagagcagatatattattatgccataaat 210  Q
    |||||||  ||||||||||||||||||  |||||||| |||||||||| ||||   ||||||||||||||||    
T  8480875 agtgattaattcagccttcatgaaaattaaatctaaacaggttcagagtagat---ttattatgccataaat 8480807  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 8355110 - 8355175
Alignment:
Q  40 atttcacaccattcgcagttgacttgttgagagtaagacaatggaaagatgaagtaaatggttcaa 105  Q
    |||||||| ||||| || ||| ||| ||||||||| || |||||||||||  ||||||||||||||    
T  8355110 atttcacatcattcccaattgtcttcttgagagtaggaaaatggaaagatacagtaaatggttcaa 8355175  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 51650325 - 51650242
Alignment:
Q  44 cacaccattcgcagttgacttgttgagagtaagacaatggaaagatgaagtaaatggttcaagaaacaactcaagcacaaagtt 127  Q
    |||||||||  || ||||||||||||||||| ||| | ||||||||| ||||||||||||||    ||||||||||||||||||    
T  51650325 cacaccatttccaattgacttgttgagagtaggacgagggaaagatgcagtaaatggttcaaagtccaactcaagcacaaagtt 51650242  T

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